{ "tc_result": [ { "organism_name": "Williamsia herbipolensis", "strain": "strain=ARP1", "accession": "GCA_000964005.1", "taxid": 1603258, "species_taxid": 1603258, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1556, "total_fragments": 1557, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Williamsia phyllosphaerae", "strain": "strain=CCM 7855", "accession": "GCA_014635305.1", "taxid": 885042, "species_taxid": 885042, "relation_to_type": "type", "validated": true, "ani": 82.3631, "matched_fragments": 1031, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Williamsia maris", "strain": "strain=DSM 44693", "accession": "GCA_024171815.1", "taxid": 72806, "species_taxid": 72806, "relation_to_type": "type", "validated": true, "ani": 82.2789, "matched_fragments": 1064, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Williamsia serinedens", "strain": "strain=DSM 45037", "accession": "GCA_024171725.1", "taxid": 391736, "species_taxid": 391736, "relation_to_type": "type", "validated": true, "ani": 81.1363, "matched_fragments": 937, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Williamsia deligens", "strain": "strain=DSM 44902", "accession": "GCA_024171765.1", "taxid": 321325, "species_taxid": 321325, "relation_to_type": "type", "validated": true, "ani": 81.1099, "matched_fragments": 937, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia rubripertincta", "strain": "strain=NBRC 101908", "accession": "GCA_000327325.1", "taxid": 36822, "species_taxid": 36822, "relation_to_type": "type", "validated": true, "ani": 79.2113, "matched_fragments": 582, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia rubripertincta", "strain": "strain=ATCC 14352", "accession": "GCA_012396225.1", "taxid": 36822, "species_taxid": 36822, "relation_to_type": "type", "validated": true, "ani": 79.192, "matched_fragments": 584, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Williamsia sterculiae", "strain": "strain=CPCC 203464", "accession": "GCA_900156495.1", "taxid": 1344003, "species_taxid": 1344003, "relation_to_type": "type", "validated": true, "ani": 78.7805, "matched_fragments": 606, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia mangrovi", "strain": "strain=HNM0687", "accession": "GCA_024734075.1", "taxid": 2665643, "species_taxid": 2665643, "relation_to_type": "type", "validated": true, "ani": 78.6744, "matched_fragments": 562, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia mangrovi", "strain": "strain=HNM0687", "accession": "GCA_009828195.1", "taxid": 2665643, "species_taxid": 2665643, "relation_to_type": "type", "validated": true, "ani": 78.6212, "matched_fragments": 554, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prescottella agglutinans", "strain": "strain=CCTCC AB2014297", "accession": "GCA_004011865.1", "taxid": 1644129, "species_taxid": 1644129, "relation_to_type": "type", "validated": true, "ani": 78.212, "matched_fragments": 520, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus wratislaviensis", "strain": "strain=NCTC13229", "accession": "GCA_900455735.1", "taxid": 44752, "species_taxid": 44752, "relation_to_type": "suspected-type", "validated": true, "ani": 77.8543, "matched_fragments": 514, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus pseudokoreensis", "strain": "strain=R79", "accession": "GCA_017068395.1", "taxid": 2811421, "species_taxid": 2811421, "relation_to_type": "type", "validated": true, "ani": 77.8491, "matched_fragments": 535, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus wratislaviensis", "strain": "strain=NBRC 100605", "accession": "GCA_000583735.1", "taxid": 44752, "species_taxid": 44752, "relation_to_type": "suspected-type", "validated": true, "ani": 77.7138, "matched_fragments": 531, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000964005.1", "gtdb_species": "s__Williamsia_A herbipolensis", "ani": 100.0, "matched_fragments": 1556, "total_fragments": 1557, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Williamsia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.03", "min_intra_species_ani": "95.03", "mean_intra_species_af": "0.89", 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"N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018474015.1", "gtdb_species": "s__Williamsia_A sp018474015", "ani": 80.1199, "matched_fragments": 715, "total_fragments": 1557, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Williamsia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000344155.1", "gtdb_species": "s__Gordonia paraffinivorans", "ani": 79.5548, "matched_fragments": 597, "total_fragments": 1557, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.97", "min_intra_species_ani": "98.74", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 12, 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sp009828195", "ani": 78.65, "matched_fragments": 548, "total_fragments": 1557, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000298195.1", "gtdb_species": "s__Gordonia rhizosphera", "ani": 78.6293, "matched_fragments": 562, "total_fragments": 1557, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002700145.1", "gtdb_species": "s__Gordonia sp002700145", "ani": 78.3579, "matched_fragments": 565, "total_fragments": 1557, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004011865.1", "gtdb_species": "s__Rhodococcus agglutinans", "ani": 78.2357, "matched_fragments": 516, "total_fragments": 1557, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017068395.1", "gtdb_species": "s__Rhodococcus sp002165735", "ani": 77.8466, "matched_fragments": 534, "total_fragments": 1557, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.37", "min_intra_species_ani": "95.32", "mean_intra_species_af": "0.78", "min_intra_species_af": "0.69", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_900455735.1", "gtdb_species": "s__Rhodococcus wratislaviensis", "ani": 77.8252, "matched_fragments": 518, "total_fragments": 1557, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.31", "min_intra_species_ani": "98.94", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 4, "status": "-" } ] }