{ "type": "genome", "identifier": "GCF_000964005.1", "organism": "Williamsia herbipolensis", "title": "Williamsia herbipolensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Wuerzburg", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000964005.1", "bioproject": "PRJNA224116", "biosample": "SAMN03323777", "wgs_master": "JXYP00000000.1", "refseq_category": "na", "taxid": "1603258", "species_taxid": "1603258", "organism_name": "Williamsia herbipolensis", "infraspecific_name": "strain=ARP1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/03/27", "asm_name": "WiARP1.0", "asm_submitter": "University of Wuerzburg", "gbrs_paired_asm": "GCA_000964005.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/964/005/GCF_000964005.1_WiARP1.0", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4744957", "genome_size_ungapped": "4744957", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "50", "contig_count": "50", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000964005.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4506", "protein_coding_gene_count": "4382", "non_coding_gene_count": "55", "pubmed_id": "26779305" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-03-27", "dateModified": "2015-03-27", "datePublished": "2015-03-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Williamsia herbipolensis" ], "sample_taxid": [ "1603258" ], "sample_host_organism": [ "Arabidopsis thaliana" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Botanical garden of the University of Wuerzburg" ], "sample_host_location_id": [], "data_size": "1.283 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4744957", "Number of Sequences": "50", "Longest Sequences (bp)": "428335", "N50 (bp)": "140970", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.6", "Number of CDSs": "4482", "Average Protein Length": "323.0", "Coding Ratio (%)": "91.5", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Williamsia herbipolensis", "strain": "strain=ARP1", "accession": "GCA_000964005.1", "taxid": 1603258, "species_taxid": 1603258, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1556, "total_fragments": 1557, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Williamsia phyllosphaerae", "strain": "strain=CCM 7855", "accession": "GCA_014635305.1", "taxid": 885042, "species_taxid": 885042, "relation_to_type": "type", "validated": true, "ani": 82.3631, "matched_fragments": 1031, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Williamsia maris", "strain": "strain=DSM 44693", "accession": "GCA_024171815.1", "taxid": 72806, "species_taxid": 72806, "relation_to_type": "type", "validated": true, "ani": 82.2789, "matched_fragments": 1064, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Williamsia serinedens", "strain": "strain=DSM 45037", "accession": "GCA_024171725.1", "taxid": 391736, "species_taxid": 391736, "relation_to_type": "type", "validated": true, "ani": 81.1363, "matched_fragments": 937, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Williamsia deligens", "strain": "strain=DSM 44902", "accession": "GCA_024171765.1", "taxid": 321325, "species_taxid": 321325, "relation_to_type": "type", "validated": true, "ani": 81.1099, "matched_fragments": 937, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia rubripertincta", "strain": "strain=NBRC 101908", "accession": "GCA_000327325.1", "taxid": 36822, "species_taxid": 36822, "relation_to_type": "type", "validated": true, "ani": 79.2113, "matched_fragments": 582, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia rubripertincta", "strain": "strain=ATCC 14352", "accession": "GCA_012396225.1", "taxid": 36822, "species_taxid": 36822, "relation_to_type": "type", "validated": true, "ani": 79.192, "matched_fragments": 584, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Williamsia sterculiae", "strain": "strain=CPCC 203464", "accession": "GCA_900156495.1", "taxid": 1344003, "species_taxid": 1344003, "relation_to_type": "type", "validated": true, "ani": 78.7805, "matched_fragments": 606, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia mangrovi", "strain": "strain=HNM0687", "accession": "GCA_024734075.1", "taxid": 2665643, "species_taxid": 2665643, "relation_to_type": "type", "validated": true, "ani": 78.6744, "matched_fragments": 562, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia mangrovi", "strain": "strain=HNM0687", "accession": "GCA_009828195.1", "taxid": 2665643, "species_taxid": 2665643, "relation_to_type": "type", "validated": true, "ani": 78.6212, "matched_fragments": 554, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prescottella agglutinans", "strain": 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