{
    "type": "genome",
    "identifier": "GCF_000964225.1",
    "organism": "Acetobacter syzygii",
    "title": "Acetobacter syzygii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Kinki University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000964225.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00036635",
        "wgs_master": "BAMZ00000000.1",
        "refseq_category": "reference genome",
        "taxid": "146476",
        "species_taxid": "146476",
        "organism_name": "Acetobacter syzygii",
        "infraspecific_name": "strain=9H-2",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/03/21",
        "asm_name": "ASM96422v1",
        "asm_submitter": "Kinki University",
        "gbrs_paired_asm": "GCA_000964225.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/964/225/GCF_000964225.1_ASM96422v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2687370",
        "genome_size_ungapped": "2687350",
        "gc_percent": "55.500000",
        "replicon_count": "0",
        "scaffold_count": "94",
        "contig_count": "94",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000964225.1-RS_2024_12_15",
        "annotation_date": "2024-12-15",
        "total_gene_count": "2527",
        "protein_coding_gene_count": "2443",
        "non_coding_gene_count": "50",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-03-21",
    "dateModified": "2015-03-21",
    "datePublished": "2015-03-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Acetobacter syzygii"
        ],
        "sample_taxid": [
            "146476"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.763 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2683229",
        "Number of Sequences": "63",
        "Longest Sequences (bp)": "223999",
        "N50 (bp)": "168569",
        "Gap Ratio (%)": "0.000745",
        "GCcontent (%)": "55.5",
        "Number of CDSs": "2449",
        "Average Protein Length": "321.0",
        "Coding Ratio (%)": "87.9",
        "Number of rRNAs": "3",
        "Number of tRNAs": "42",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Acetobacter syzygii",
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                "accession": "GCA_000964225.1",
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 864,
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            },
            {
                "organism_name": "Acetobacter syzygii",
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            {
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                "status": "below_threshold"
            },
            {
                "organism_name": "Acetobacter fabarum",
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                "species_taxid": 483199,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acetobacter ghanensis",
                "strain": "strain=LMG 23848",
                "accession": "GCA_011516865.1",
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                "species_taxid": 431306,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acetobacter ghanensis",
                "strain": "strain=LMG 23848T",
                "accession": "GCA_001499675.1",
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                "species_taxid": 431306,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.5018,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acetobacter lovaniensis",
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                "accession": "GCA_011516875.1",
                "taxid": 104100,
                "species_taxid": 104100,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.2033,
                "matched_fragments": 661,
                "total_fragments": 868,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acetobacter lovaniensis",
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                "accession": "GCA_014207635.1",
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                "species_taxid": 104100,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acetobacter okinawensis",
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                "accession": "GCA_000613865.1",
                "taxid": 1076594,
                "species_taxid": 1076594,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.9394,
                "matched_fragments": 613,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
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        },
        "gtdb_result": [
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                "accession": "GCF_000964225.1",
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                "matched_fragments": 864,
                "total_fragments": 868,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.87",
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            },
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_011516925.1",
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            },
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            {
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            },
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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    "_genome_taxon": [
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}