{ "type": "genome", "identifier": "GCF_000964345.1", "organism": "Acidiphilium multivorum AIU301", "title": "Acidiphilium multivorum AIU301", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kinki University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000964345.1", "bioproject": "PRJNA224116", "biosample": "SAMD00036636", "wgs_master": "BANA00000000.1", "refseq_category": "na", "taxid": "926570", "species_taxid": "62140", "organism_name": "Acidiphilium multivorum AIU301", "infraspecific_name": "strain=AIU301", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/03/21", "asm_name": "ASM96434v1", "asm_submitter": "Kinki University", "gbrs_paired_asm": "GCA_000964345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/964/345/GCF_000964345.1_ASM96434v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3978089", "genome_size_ungapped": "3978039", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "1044", "contig_count": "1044", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000964345.1-RS_2024_12_15", "annotation_date": "2024-12-15", "total_gene_count": "4066", "protein_coding_gene_count": "3786", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-03-21", "dateModified": "2015-03-21", "datePublished": "2015-03-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Acidiphilium multivorum AIU301" ], "sample_taxid": [ "926570" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], 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1072, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000202835.1", "gtdb_species": "s__Acidiphilium multivorum", "ani": 99.9895, "matched_fragments": 1070, "total_fragments": 1072, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acidiphilium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.69", "min_intra_species_ani": "98.42", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.87", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCF_902712915.1", "gtdb_species": "s__Acidiphilium sp002255515", "ani": 89.3646, "matched_fragments": 745, "total_fragments": 1072, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acidiphilium", "ani_circumscription_radius": 95.0, 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