{ "type": "genome", "identifier": "GCF_000964545.1", "organism": "Comamonas thiooxydans", "title": "Comamonas thiooxydans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000964545.1", "bioproject": "PRJNA224116", "biosample": "SAMD00019661", "wgs_master": "BBVD00000000.1", "refseq_category": "na", "taxid": "363952", "species_taxid": "363952", "organism_name": "Comamonas thiooxydans", "infraspecific_name": "strain=DSM 17888", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/03/21", "asm_name": "ASM96454v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_000964545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/964/545/GCF_000964545.1_ASM96454v1", 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"sample_host_location": [ "India:Orissa, Athamallik" ], "sample_host_location_id": [], "data_size": "1.464 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5244722", "Number of Sequences": "42", "Longest Sequences (bp)": "661539", "N50 (bp)": "370952", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.6", "Number of CDSs": "4753", "Average Protein Length": "321.5", "Coding Ratio (%)": "87.4", "Number of rRNAs": "2", "Number of tRNAs": "64", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Comamonas thiooxydans", "strain": "strain=DSM 17888", "accession": "GCA_000964545.1", "taxid": 363952, "species_taxid": 363952, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1722, "total_fragments": 1725, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Comamonas thiooxydans", "strain": "strain=DSM 17888", "accession": "GCA_001418295.1", "taxid": 363952, "species_taxid": 363952, "relation_to_type": "type", "validated": true, "ani": 99.9968, "matched_fragments": 1721, "total_fragments": 1725, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Comamonas thiooxydans", "strain": "strain=DSM 17888", "accession": "GCA_001517325.1", "taxid": 363952, "species_taxid": 363952, "relation_to_type": "type", "validated": true, "ani": 99.9968, "matched_fragments": 1721, "total_fragments": 1725, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Comamonas testosteroni", "strain": "strain=ATCC 11996", "accession": "GCA_000241525.2", "taxid": 285, "species_taxid": 285, "relation_to_type": "suspected-type", "validated": true, "ani": 94.3917, "matched_fragments": 1490, "total_fragments": 1725, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas testosteroni", "strain": "strain=NCTC10698", "accession": "GCA_900461225.1", "taxid": 285, "species_taxid": 285, "relation_to_type": "suspected-type", "validated": true, "ani": 94.3774, "matched_fragments": 1507, "total_fragments": 1725, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas fluminis", "strain": "strain=CJ34", "accession": "GCA_019186805.1", "taxid": 2796366, "species_taxid": 2796366, "relation_to_type": "type", "validated": true, "ani": 84.7, "matched_fragments": 1098, "total_fragments": 1725, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas koreensis", "strain": "strain=KCTC 12005", "accession": "GCA_021026195.1", "taxid": 160825, "species_taxid": 160825, "relation_to_type": "type", "validated": true, "ani": 80.213, "matched_fragments": 684, "total_fragments": 1725, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax facilis", 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