{
    "type": "genome",
    "identifier": "GCF_000966265.1",
    "organism": "Palaeococcus ferrophilus DSM 13482",
    "title": "Palaeococcus ferrophilus DSM 13482",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000966265.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02744072",
        "wgs_master": "LANF00000000.1",
        "refseq_category": "reference genome",
        "taxid": "588319",
        "species_taxid": "83868",
        "organism_name": "Palaeococcus ferrophilus DSM 13482",
        "infraspecific_name": "strain=DSM 13482",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/03/30",
        "asm_name": "ASM96626v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000966265.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/966/265/GCF_000966265.1_ASM96626v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "2206431",
        "genome_size_ungapped": "2206431",
        "gc_percent": "54.500000",
        "replicon_count": "0",
        "scaffold_count": "23",
        "contig_count": "23",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000966265.1-RS_2024_10_21",
        "annotation_date": "2024-10-21",
        "total_gene_count": "2413",
        "protein_coding_gene_count": "2313",
        "non_coding_gene_count": "55",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-03-30",
    "dateModified": "2015-03-30",
    "datePublished": "2015-03-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Palaeococcus ferrophilus DSM 13482"
        ],
        "sample_taxid": [
            "588319"
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        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan: deep-sea hydrothermal vent chimney at the Myojin Knoll in the Ogasawara-Bonin Arc"
        ],
        "sample_host_location_id": [],
        "data_size": "0.628 MB",
        "sample_ph_range": {
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            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
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    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2206431",
        "Number of Sequences": "23",
        "Longest Sequences (bp)": "377594",
        "N50 (bp)": "210129",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "54.3",
        "Number of CDSs": "2339",
        "Average Protein Length": "286.6",
        "Coding Ratio (%)": "91.1",
        "Number of rRNAs": "4",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "6"
    },
    "has_analysis": true,
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                "taxid": 72803,
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
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            },
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                "species_taxid": 311400,
                "relation_to_type": "type",
                "validated": true,
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            },
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            },
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                "matched_fragments": 296,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermococcus cleftensis",
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                "accession": "GCA_000265525.1",
                "taxid": 163003,
                "species_taxid": 163003,
                "relation_to_type": "type",
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                "ani": 78.8495,
                "matched_fragments": 277,
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                "ani_threshold": 95,
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            },
            {
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                "accession": "GCA_002214565.1",
                "taxid": 187880,
                "species_taxid": 187880,
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                "matched_fragments": 290,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
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            "contamination": 0.0,
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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                "mean_intra_species_ani": "N/A",
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            },
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            },
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        ]
    },
    "_bac2feature": {
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        "cell_diameter": null,
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        "doubling_h": -0.276,
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        "facultative_respiration": 0.0,
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        "bacillus_cell_shape": 0.0,
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        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
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}