{
    "type": "genome",
    "identifier": "GCF_000970025.1",
    "organism": "Methanosarcina barkeri MS",
    "title": "Methanosarcina barkeri MS",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Illinois at Urbana-Champaign",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000970025.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03074575",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1434108",
        "species_taxid": "2208",
        "organism_name": "Methanosarcina barkeri MS",
        "infraspecific_name": "strain=MS",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/04/07",
        "asm_name": "ASM97002v1",
        "asm_submitter": "University of Illinois at Urbana-Champaign",
        "gbrs_paired_asm": "GCA_000970025.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/970/025/GCF_000970025.1_ASM97002v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "4574907",
        "genome_size_ungapped": "4574907",
        "gc_percent": "39.000000",
        "replicon_count": "2",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000970025.1-RS_2024_10_21",
        "annotation_date": "2024-10-21",
        "total_gene_count": "3849",
        "protein_coding_gene_count": "3636",
        "non_coding_gene_count": "69",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-04-07",
    "dateModified": "2015-04-07",
    "datePublished": "2015-04-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Methanosarcina barkeri MS"
        ],
        "sample_taxid": [
            "1434108"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.279 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4574907",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "4533209",
        "N50 (bp)": "4533209",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "39.2",
        "Number of CDSs": "3771",
        "Average Protein Length": "283.4",
        "Coding Ratio (%)": "70.1",
        "Number of rRNAs": "9",
        "Number of tRNAs": "57",
        "Number of CRISPRs": "7"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Methanosarcina barkeri",
                "strain": "strain=MS",
                "accession": "GCA_000970025.1",
                "taxid": 2208,
                "species_taxid": 2208,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1524,
                "total_fragments": 1524,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Methanosarcina barkeri",
                "strain": "strain=JCM 10043",
                "accession": "GCA_001316305.1",
                "taxid": 2208,
                "species_taxid": 2208,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.7428,
                "matched_fragments": 1356,
                "total_fragments": 1524,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Methanosarcina vacuolata",
                "strain": "strain=Z-761",
                "accession": "GCA_000969905.1",
                "taxid": 2215,
                "species_taxid": 2215,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.2218,
                "matched_fragments": 1155,
                "total_fragments": 1524,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanosarcina spelaei",
                "strain": "strain=MC-15",
                "accession": "GCA_002287235.1",
                "taxid": 1036679,
                "species_taxid": 1036679,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.6999,
                "matched_fragments": 1060,
                "total_fragments": 1524,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanosarcina flavescens",
                "strain": "strain=E03.2",
                "accession": "GCA_001304615.2",
                "taxid": 1715806,
                "species_taxid": 1715806,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2071,
                "matched_fragments": 761,
                "total_fragments": 1524,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanosarcina thermophila",
                "strain": "strain=TM-1",
                "accession": "GCA_000969885.1",
                "taxid": 2210,
                "species_taxid": 2210,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0957,
                "matched_fragments": 704,
                "total_fragments": 1524,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000970025.1",
                "gtdb_species": "s__Methanosarcina barkeri",
                "ani": 100.0,
                "matched_fragments": 1524,
                "total_fragments": 1524,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanosarcina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.62",
                "min_intra_species_ani": "99.28",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000195895.1",
                "gtdb_species": "s__Methanosarcina barkeri_B",
                "ani": 91.5006,
                "matched_fragments": 1231,
                "total_fragments": 1524,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanosarcina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000969905.1",
                "gtdb_species": "s__Methanosarcina vacuolata",
                "ani": 90.197,
                "matched_fragments": 1158,
                "total_fragments": 1524,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanosarcina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.34",
                "min_intra_species_ani": "98.34",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002287235.1",
                "gtdb_species": "s__Methanosarcina spelaei",
                "ani": 86.7453,
                "matched_fragments": 1056,
                "total_fragments": 1524,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanosarcina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.12",
                "min_intra_species_ani": "95.12",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002505485.1",
                "gtdb_species": "s__Methanosarcina sp002505485",
                "ani": 86.5469,
                "matched_fragments": 951,
                "total_fragments": 1524,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanosarcina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000970305.1",
                "gtdb_species": "s__Methanosarcina barkeri_A",
                "ani": 86.3796,
                "matched_fragments": 1141,
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanosarcina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013331275.1",
                "gtdb_species": "s__Methanosarcina sp11020u",
                "ani": 86.0183,
                "matched_fragments": 983,
                "total_fragments": 1524,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanosarcina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002496565.1",
                "gtdb_species": "s__Methanosarcina sp002496565",
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                "matched_fragments": 925,
                "total_fragments": 1524,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanosarcina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.74",
                "min_intra_species_ani": "97.33",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.176,
        "cell_length": 0.176,
        "doubling_h": 0.841,
        "growth_tmp": 37.633,
        "optimum_tmp": 37.5,
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        "genome_size": 4643674.091,
        "gc_content": 38.588,
        "coding_genes": 3566.462,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 58.75,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Methanosarcina",
        "barkeri",
        "MS"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}