{ "type": "genome", "identifier": "GCF_000970345.1", "organism": "Robbsia andropogonis", "title": "Robbsia andropogonis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Lab. de Bacteriologia Vegetal", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000970345.1", "bioproject": "PRJNA224116", "biosample": "SAMN03450203", "wgs_master": "LAQU00000000.1", "refseq_category": "na", "taxid": "28092", "species_taxid": "28092", "organism_name": "Robbsia andropogonis", "infraspecific_name": "strain=ICMP2807", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/04/07", "asm_name": "ASM97034v1", "asm_submitter": "Lab. de Bacteriologia Vegetal", "gbrs_paired_asm": "GCA_000970345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/970/345/GCF_000970345.1_ASM97034v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6203810", "genome_size_ungapped": "6203810", "gc_percent": "59.000000", "replicon_count": "0", "scaffold_count": "272", "contig_count": "272", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-03", "total_gene_count": "5514", "protein_coding_gene_count": "5121", "non_coding_gene_count": "54", "pubmed_id": "25977431" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-04-07", "dateModified": "2015-04-07", "datePublished": "2015-04-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Robbsia andropogonis" ], "sample_taxid": [ "28092" ], "sample_host_organism": [ "Sorghum bicolor" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "1.761 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6203810", "Number of Sequences": "272", "Longest Sequences (bp)": "458709", "N50 (bp)": "155754", "Gap Ratio (%)": "0.000016", "GCcontent (%)": "58.9", "Number of CDSs": "5162", "Average Protein Length": "326.8", "Coding Ratio (%)": "81.6", "Number of rRNAs": "2", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Robbsia andropogonis", "strain": "strain=ICMP2807", "accession": "GCA_000970345.1", "taxid": 28092, "species_taxid": 28092, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1939, "total_fragments": 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77.3602, "matched_fragments": 292, "total_fragments": 1943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia puraquae", "strain": "strain=LMG 29660", "accession": "GCA_902859845.1", "taxid": 1904757, "species_taxid": 1904757, "relation_to_type": "type", "validated": true, "ani": 77.3376, "matched_fragments": 279, "total_fragments": 1943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia madseniana", "strain": "strain=RP11", "accession": "GCA_009690905.1", "taxid": 2599607, "species_taxid": 2599607, "relation_to_type": "type", "validated": true, "ani": 77.334, "matched_fragments": 271, "total_fragments": 1943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caballeronia terrestris", "strain": "", "accession": "GCA_001544515.2", "taxid": 1226301, "species_taxid": 1226301, "relation_to_type": "type", "validated": true, "ani": 77.3192, "matched_fragments": 247, "total_fragments": 1943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caballeronia concitans", "strain": "", "accession": "GCA_001544615.2", "taxid": 1777133, "species_taxid": 1777133, "relation_to_type": "type", "validated": true, "ani": 77.3104, "matched_fragments": 239, "total_fragments": 1943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia hiiakae", "strain": "strain=LMG 27952", "accession": "GCA_904848665.1", "taxid": 1081782, "species_taxid": 1081782, "relation_to_type": "type", "validated": true, "ani": 77.2523, "matched_fragments": 234, "total_fragments": 1943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia aenigmatica", "strain": "strain=LMG 13014", "accession": "GCA_902499175.1", "taxid": 2015348, "species_taxid": 2015348, "relation_to_type": "suspected-type", "validated": true, "ani": 77.2489, "matched_fragments": 286, "total_fragments": 1943, "ani_threshold": 95, "status": "below_threshold" }, 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