{
    "type": "genome",
    "identifier": "GCF_000970685.1",
    "organism": "Domibacillus indicus",
    "title": "Domibacillus indicus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Korea Polar Research Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000970685.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03406600",
        "wgs_master": "LAJB00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1437523",
        "species_taxid": "1437523",
        "organism_name": "Domibacillus indicus",
        "infraspecific_name": "strain=SD 111",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/04/08",
        "asm_name": "ASM97068v1",
        "asm_submitter": "Korea Polar Research Institute",
        "gbrs_paired_asm": "GCA_000970685.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/970/685/GCF_000970685.1_ASM97068v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3604247",
        "genome_size_ungapped": "3604247",
        "gc_percent": "44.500000",
        "replicon_count": "0",
        "scaffold_count": "32",
        "contig_count": "32",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000970685.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "3659",
        "protein_coding_gene_count": "3526",
        "non_coding_gene_count": "104",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-04-08",
    "dateModified": "2015-04-08",
    "datePublished": "2015-04-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Domibacillus indicus"
        ],
        "sample_taxid": [
            "1437523"
        ],
        "sample_host_organism": [
            "missing"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "India"
        ],
        "sample_host_location_id": [],
        "data_size": "1.022 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 1.85,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3604247",
        "Number of Sequences": "32",
        "Longest Sequences (bp)": "792091",
        "N50 (bp)": "602761",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "44.5",
        "Number of CDSs": "3568",
        "Average Protein Length": "291.8",
        "Coding Ratio (%)": "86.7",
        "Number of rRNAs": "4",
        "Number of tRNAs": "91",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Domibacillus indicus",
                "strain": "strain=SD 111",
                "accession": "GCA_000970685.1",
                "taxid": 1437523,
                "species_taxid": 1437523,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1182,
                "total_fragments": 1185,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Domibacillus tundrae",
                "strain": "strain=PAMC 80007",
                "accession": "GCA_000970675.1",
                "taxid": 1587527,
                "species_taxid": 1587527,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5656,
                "matched_fragments": 600,
                "total_fragments": 1185,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Domibacillus iocasae",
                "strain": "strain=DSM 29979",
                "accession": "GCA_001750285.1",
                "taxid": 1714016,
                "species_taxid": 1714016,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2426,
                "matched_fragments": 629,
                "total_fragments": 1185,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Domibacillus robiginosus",
                "strain": "strain=WS 4628",
                "accession": "GCA_000966195.1",
                "taxid": 1071054,
                "species_taxid": 1071054,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.5768,
                "matched_fragments": 606,
                "total_fragments": 1185,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Domibacillus enclensis",
                "strain": "strain=NIO-1016",
                "accession": "GCA_000966185.1",
                "taxid": 1017273,
                "species_taxid": 1017273,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1498,
                "matched_fragments": 523,
                "total_fragments": 1185,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Domibacillus enclensis",
                "strain": "strain=DSM 25145",
                "accession": "GCA_002237775.1",
                "taxid": 1017273,
                "species_taxid": 1017273,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9887,
                "matched_fragments": 550,
                "total_fragments": 1185,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Domibacillus enclensis",
                "strain": "strain=NIO-1016",
                "accession": "GCA_900156125.1",
                "taxid": 1017273,
                "species_taxid": 1017273,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9887,
                "matched_fragments": 550,
                "total_fragments": 1185,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Domibacillus antri",
                "strain": "strain=XD80",
                "accession": "GCA_001936625.1",
                "taxid": 1714264,
                "species_taxid": 1714264,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2637,
                "matched_fragments": 373,
                "total_fragments": 1185,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Domibacillus epiphyticus",
                "strain": "strain=SAB 38",
                "accession": "GCA_001975785.1",
                "taxid": 1714355,
                "species_taxid": 1714355,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0769,
                "matched_fragments": 312,
                "total_fragments": 1185,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cytobacillus solani",
                "strain": "strain=FJAT-18043",
                "accession": "GCA_001420595.1",
                "taxid": 1637975,
                "species_taxid": 1637975,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7661,
                "matched_fragments": 58,
                "total_fragments": 1185,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus aerolatus",
                "strain": "strain=CX253",
                "accession": "GCA_009183655.1",
                "taxid": 2653354,
                "species_taxid": 2653354,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1314,
                "matched_fragments": 122,
                "total_fragments": 1185,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus thermotolerans",
                "strain": "strain=SGZ-8",
                "accession": "GCA_000812025.2",
                "taxid": 1221996,
                "species_taxid": 1221996,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.919,
                "matched_fragments": 83,
                "total_fragments": 1185,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 1.85,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000970685.1",
                "gtdb_species": "s__Domibacillus indicus",
                "ani": 100.0,
                "matched_fragments": 1182,
                "total_fragments": 1185,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Domibacillaceae;g__Domibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000970675.1",
                "gtdb_species": "s__Domibacillus tundrae",
                "ani": 81.5592,
                "matched_fragments": 602,
                "total_fragments": 1185,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Domibacillaceae;g__Domibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001750285.1",
                "gtdb_species": "s__Domibacillus iocasae",
                "ani": 81.2642,
                "matched_fragments": 627,
                "total_fragments": 1185,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Domibacillaceae;g__Domibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000966195.1",
                "gtdb_species": "s__Domibacillus robiginosus",
                "ani": 80.5527,
                "matched_fragments": 608,
                "total_fragments": 1185,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Domibacillaceae;g__Domibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900156125.1",
                "gtdb_species": "s__Domibacillus enclensis",
                "ani": 79.9887,
                "matched_fragments": 550,
                "total_fragments": 1185,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Domibacillaceae;g__Domibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001936625.1",
                "gtdb_species": "s__Domibacillus antri",
                "ani": 79.2768,
                "matched_fragments": 372,
                "total_fragments": 1185,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Domibacillaceae;g__Domibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001975785.1",
                "gtdb_species": "s__Domibacillus epiphyticus",
                "ani": 79.0769,
                "matched_fragments": 312,
                "total_fragments": 1185,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Domibacillaceae;g__Domibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000294775.2",
                "gtdb_species": "s__Cytobacillus oceanisediminis_B",
                "ani": 77.2759,
                "matched_fragments": 82,
                "total_fragments": 1185,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.75",
                "min_intra_species_ani": "98.26",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_009183655.1",
                "gtdb_species": "s__Pseudobacillus aerolatus",
                "ani": 77.1856,
                "matched_fragments": 122,
                "total_fragments": 1185,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Domibacillaceae;g__Pseudobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.046,
        "cell_length": 0.544,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": 30.0,
        "optimum_ph": 7.5,
        "genome_size": 3604247.0,
        "gc_content": 44.51,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Domibacillus",
        "indicus"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}