{ "type": "genome", "identifier": "GCF_000971195.1", "organism": "Demequina soli", "title": "Demequina soli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation Biological Resource Center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000971195.1", "bioproject": "PRJNA224116", "biosample": "SAMD00019183", "wgs_master": "BBLZ00000000.1", "refseq_category": "reference genome", "taxid": "1638987", "species_taxid": "1638987", "organism_name": "Demequina soli", "infraspecific_name": "strain=NBRC 109394", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/04/01", "asm_name": "ASM97119v1", "asm_submitter": "National Institute of Technology and Evaluation Biological Resource Center", "gbrs_paired_asm": "GCA_000971195.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/971/195/GCF_000971195.1_ASM97119v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3002692", "genome_size_ungapped": "3000944", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "16", "contig_count": "16", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000971195.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "2870", "protein_coding_gene_count": "2799", "non_coding_gene_count": "54", "pubmed_id": "26354549" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-04-01", "dateModified": "2015-04-01", "datePublished": "2015-04-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Demequina soli" ], "sample_taxid": [ "1638987" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan:Okinawa, Iriomote Island" ], "sample_host_location_id": [], "data_size": "0.790 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3002692", "Number of Sequences": "16", "Longest Sequences (bp)": "724987", "N50 (bp)": "518962", "Gap Ratio (%)": "0.058214", "GCcontent (%)": "72.4", "Number of CDSs": "2828", "Average Protein Length": "326.1", "Coding Ratio (%)": "92.1", "Number of rRNAs": "3", "Number of tRNAs": "60", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Demequina soli", "strain": "strain=NBRC 109394", "accession": "GCA_000971195.1", "taxid": 1638987, "species_taxid": 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86.5869, "matched_fragments": 743, "total_fragments": 992, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina phytophila", "strain": "strain=NBRC 109391", "accession": "GCA_000971135.1", "taxid": 1638981, "species_taxid": 1638981, "relation_to_type": "type", "validated": true, "ani": 86.0758, "matched_fragments": 788, "total_fragments": 992, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina mangrovi", "strain": "strain=NBRC 105856", "accession": "GCA_000759715.1", "taxid": 1043493, "species_taxid": 1043493, "relation_to_type": "type", "validated": true, "ani": 85.5582, "matched_fragments": 694, "total_fragments": 992, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina mangrovi", "strain": "strain=DSM 24868", "accession": "GCA_900109245.1", "taxid": 1043493, "species_taxid": 1043493, "relation_to_type": "type", "validated": true, "ani": 85.5541, "matched_fragments": 703, "total_fragments": 992, 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