{
    "type": "genome",
    "identifier": "GCF_000971985.1",
    "organism": "Paenibacillus dauci",
    "title": "Paenibacillus dauci",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Nanjing Tech University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000971985.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03447476",
        "wgs_master": "LAQQ00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1567106",
        "species_taxid": "1567106",
        "organism_name": "Paenibacillus dauci",
        "infraspecific_name": "strain=H9",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/04/15",
        "asm_name": "ASM97198v1",
        "asm_submitter": "Nanjing Tech University",
        "gbrs_paired_asm": "GCA_000971985.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/971/985/GCF_000971985.1_ASM97198v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5449237",
        "genome_size_ungapped": "5388450",
        "gc_percent": "46.500000",
        "replicon_count": "0",
        "scaffold_count": "19",
        "contig_count": "26",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000971985.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "4663",
        "protein_coding_gene_count": "4545",
        "non_coding_gene_count": "86",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-04-15",
    "dateModified": "2015-04-15",
    "datePublished": "2015-04-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paenibacillus dauci"
        ],
        "sample_taxid": [
            "1567106"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not collected"
        ],
        "sample_host_location_id": [],
        "data_size": "1.532 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5449237",
        "Number of Sequences": "19",
        "Longest Sequences (bp)": "1603931",
        "N50 (bp)": "815348",
        "Gap Ratio (%)": "1.115514",
        "GCcontent (%)": "46.5",
        "Number of CDSs": "4649",
        "Average Protein Length": "321.6",
        "Coding Ratio (%)": "82.3",
        "Number of rRNAs": "2",
        "Number of tRNAs": "75",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            },
            {
                "organism_name": "Paenibacillus bovis",
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Paenibacillus wulumuqiensis",
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                "species_taxid": 539262,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Paenibacillus nuruki",
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                "species_taxid": 1886670,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus kribbensis",
                "strain": "strain=AM49",
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                "taxid": 172713,
                "species_taxid": 172713,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus faecalis",
                "strain": "strain=Marseille-P3787",
                "accession": "GCA_900289175.1",
                "taxid": 2079532,
                "species_taxid": 2079532,
                "relation_to_type": "type",
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                "matched_fragments": 93,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus illinoisensis",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus gallinarum",
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                "species_taxid": 2762232,
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                "validated": true,
                "ani": 77.0322,
                "matched_fragments": 91,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus albidus",
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                "species_taxid": 2041023,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus periandrae",
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                "accession": "GCA_022458865.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus daejeonensis",
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                "accession": "GCA_000378385.1",
                "taxid": 135193,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2341,
                "matched_fragments": 78,
                "total_fragments": 1808,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
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                "accession": "GCF_000971985.1",
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    "_bac2feature": {
        "phenotypes": null,
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}