{ "type": "genome", "identifier": "GCF_000973625.1", "organism": "Polynucleobacter duraquae", "title": "Polynucleobacter duraquae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "FREDI", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000973625.1", "bioproject": "PRJNA224116", "biosample": "SAMN02708862", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1835254", "species_taxid": "1835254", "organism_name": "Polynucleobacter duraquae", "infraspecific_name": "strain=MWH-MoK4", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/04/20", "asm_name": "ASM97362v1", "asm_submitter": "FREDI", "gbrs_paired_asm": "GCA_000973625.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/973/625/GCF_000973625.1_ASM97362v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2026292", "genome_size_ungapped": "2026292", "gc_percent": "45.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-03", "total_gene_count": "2105", "protein_coding_gene_count": "2043", "non_coding_gene_count": "46", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-04-20", "dateModified": "2015-04-20", "datePublished": "2015-04-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Polynucleobacter duraquae" ], "sample_taxid": [ "1835254" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Austria: Lake Mondsee" ], "sample_host_location_id": [], "data_size": "0.577 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2026292", "Number of Sequences": "1", "Longest Sequences (bp)": "2026292", "N50 (bp)": "2026292", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.2", "Number of CDSs": "2048", "Average Protein Length": "304.4", "Coding Ratio (%)": "92.3", "Number of rRNAs": "3", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Polynucleobacter duraquae", "strain": "strain=MWH-MoK4", "accession": "GCA_000973625.1", "taxid": 1835254, "species_taxid": 1835254, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 675, "total_fragments": 675, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Polynucleobacter hallstattensis", "strain": "strain=MWH-Hall10", "accession": "GCA_018881835.1", "taxid": 1855586, "species_taxid": 1855586, "relation_to_type": "type", "validated": true, "ani": 91.3246, "matched_fragments": 602, "total_fragments": 675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter bastaniensis", "strain": "strain=AP-Basta-1000A-D1", "accession": "GCA_018882205.1", "taxid": 2081039, "species_taxid": 2081039, "relation_to_type": "type", "validated": true, "ani": 88.5391, "matched_fragments": 577, "total_fragments": 675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter corsicus", "strain": "strain=AP-Melu-1000-A1", "accession": "GCA_018688255.1", "taxid": 2081042, "species_taxid": 2081042, "relation_to_type": "type", "validated": true, "ani": 88.1597, "matched_fragments": 533, "total_fragments": 675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter arcticus", "strain": "strain=UK-Long2-W17", "accession": "GCA_013307205.1", "taxid": 1743165, "species_taxid": 1743165, "relation_to_type": "type", "validated": true, "ani": 82.2554, "matched_fragments": 420, "total_fragments": 675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter aenigmaticus", "strain": "strain=MWH-K35W1", "accession": "GCA_002206635.1", "taxid": 1743164, "species_taxid": 1743164, "relation_to_type": "type", "validated": true, "ani": 81.9269, "matched_fragments": 448, "total_fragments": 675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter tropicus", "strain": "strain=MWH-UH21B", "accession": "GCA_013307225.1", "taxid": 1743174, "species_taxid": 1743174, "relation_to_type": "type", "validated": true, "ani": 79.4014, "matched_fragments": 256, "total_fragments": 675, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": 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"min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_018688255.1", "gtdb_species": "s__Polynucleobacter sp018688255", "ani": 88.1597, "matched_fragments": 533, "total_fragments": 675, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018688355.1", "gtdb_species": "s__Polynucleobacter sp018688355", "ani": 88.0299, "matched_fragments": 550, "total_fragments": 675, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.45, "cell_length": -0.029, "doubling_h": null, "growth_tmp": 18.0, "optimum_tmp": 20.0, "optimum_ph": 6.2, "genome_size": 2026291.5, "gc_content": 45.2, "coding_genes": 2033.333, "rRNA16S_genes": 1.0, "tRNA_genes": 38.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 1.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Polynucleobacter", "duraquae" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }