{ "type": "genome", "identifier": "GCF_000974425.1", "organism": "Spirosoma radiotolerans", "title": "Spirosoma radiotolerans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyungpook National University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000974425.1", "bioproject": "PRJNA224116", "biosample": "SAMN03273316", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1379870", "species_taxid": "1379870", "organism_name": "Spirosoma radiotolerans", "infraspecific_name": "strain=DG5A", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/04/21", "asm_name": "ASM97442v1", "asm_submitter": "Kyungpook National University", "gbrs_paired_asm": "GCA_000974425.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/974/425/GCF_000974425.1_ASM97442v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7029352", "genome_size_ungapped": "7029352", "gc_percent": "49.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000974425.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "5778", "protein_coding_gene_count": "5707", "non_coding_gene_count": "51", "pubmed_id": "24748440" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-04-21", "dateModified": "2015-04-21", "datePublished": "2015-04-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Spirosoma radiotolerans" ], "sample_taxid": [ "1379870" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Seoul" ], "sample_host_location_id": [], "data_size": "2.002 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7029352", "Number of Sequences": "1", "Longest Sequences (bp)": "7029352", "N50 (bp)": "7029352", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.5", "Number of CDSs": "5656", "Average Protein Length": "358.4", "Coding Ratio (%)": "86.5", "Number of rRNAs": "6", "Number of tRNAs": "40", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Spirosoma radiotolerans", "strain": "strain=DG5A", "accession": "GCA_000974425.1", "taxid": 1379870, "species_taxid": 1379870, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2343, "total_fragments": 2343, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Spirosoma pollinicola", "strain": "strain=Ha7", "accession": "GCA_002831565.1", "taxid": 2057025, "species_taxid": 2057025, "relation_to_type": "type", "validated": true, "ani": 79.4533, "matched_fragments": 1089, "total_fragments": 2343, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma fluviale", "strain": "strain=DSM 29961", "accession": "GCA_900230225.1", "taxid": 1597977, "species_taxid": 1597977, "relation_to_type": "type", "validated": true, "ani": 78.8769, "matched_fragments": 930, "total_fragments": 2343, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma arboris", "strain": "strain=HMF4905", "accession": "GCA_009754945.1", "taxid": 2682092, "species_taxid": 2682092, "relation_to_type": "type", "validated": true, "ani": 77.8164, "matched_fragments": 646, "total_fragments": 2343, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma endophyticum", "strain": "strain=DSM 26130", "accession": "GCA_900112365.1", "taxid": 662367, "species_taxid": 662367, "relation_to_type": "type", "validated": true, "ani": 77.737, "matched_fragments": 686, "total_fragments": 2343, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma validum", "strain": "strain=BT704", "accession": "GCA_014699035.1", "taxid": 2771355, "species_taxid": 2771355, "relation_to_type": "type", "validated": true, "ani": 77.5786, "matched_fragments": 536, "total_fragments": 2343, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma endbachense", "strain": "strain=I-24", "accession": "GCA_010233585.1", "taxid": 2666025, "species_taxid": 2666025, "relation_to_type": "type", "validated": true, "ani": 77.5037, "matched_fragments": 525, "total_fragments": 2343, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma taeanense", "strain": "strain=TS118", "accession": 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76.7163, "matched_fragments": 316, "total_fragments": 2343, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Runella rosea", "strain": "strain=HYN0085", "accession": "GCA_003325355.1", "taxid": 2259595, "species_taxid": 2259595, "relation_to_type": "type", "validated": true, "ani": 76.1691, "matched_fragments": 70, "total_fragments": 2343, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fibrella aquatilis", "strain": "strain=HMF5036", "accession": "GCA_017353255.1", "taxid": 2817059, "species_taxid": 2817059, "relation_to_type": "type", "validated": true, "ani": 76.0018, "matched_fragments": 156, "total_fragments": 2343, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000974425.1", "gtdb_species": "s__Spirosoma radiotolerans", "ani": 100.0, "matched_fragments": 2343, "total_fragments": 2343, "gtdb_taxonomy": 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