{ "type": "genome", "identifier": "GCF_000974785.1", "organism": "Flavihumibacter petaseus NBRC 106054", "title": "Flavihumibacter petaseus NBRC 106054", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000974785.1", "bioproject": "PRJNA224116", "biosample": "SAMD00018683", "wgs_master": "BBWV00000000.1", "refseq_category": "reference genome", "taxid": "1220578", "species_taxid": "549295", "organism_name": "Flavihumibacter petaseus NBRC 106054", "infraspecific_name": "strain=NBRC 106054", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/04/07", "asm_name": "ASM97478v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_000974785.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/974/785/GCF_000974785.1_ASM97478v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5693518", "genome_size_ungapped": "5693518", "gc_percent": "49.500000", "replicon_count": "0", "scaffold_count": "23", "contig_count": "23", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000974785.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "4841", "protein_coding_gene_count": "4780", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-04-07", "dateModified": "2015-04-07", "datePublished": "2015-04-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavihumibacter petaseus NBRC 106054" ], "sample_taxid": [ "1220578" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Nepal" ], "sample_host_location_id": [], "data_size": "1.615 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5693518", "Number of Sequences": "23", "Longest Sequences (bp)": "2345168", "N50 (bp)": "1203663", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.3", "Number of CDSs": "4751", "Average Protein Length": "362.7", "Coding Ratio (%)": "90.8", "Number of rRNAs": "3", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavihumibacter petaseus", "strain": "strain=NBRC 106054", "accession": "GCA_000974785.1", "taxid": 549295, "species_taxid": 549295, 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77.2809, "matched_fragments": 279, "total_fragments": 1885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavihumibacter cheonanensis", "strain": "strain=WS16", "accession": "GCA_022352215.1", "taxid": 1442385, "species_taxid": 1442385, "relation_to_type": "type", "validated": true, "ani": 77.1731, "matched_fragments": 212, "total_fragments": 1885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavihumibacter fluminis", "strain": "strain=IMCC34837", "accession": "GCA_018595675.2", "taxid": 2838157, "species_taxid": 2838157, "relation_to_type": "type", "validated": true, "ani": 77.1691, "matched_fragments": 240, "total_fragments": 1885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavihumibacter rivuli", "strain": "strain=IMCC34838", "accession": "GCA_018595685.2", "taxid": 2838156, "species_taxid": 2838156, "relation_to_type": "type", "validated": true, "ani": 76.9839, "matched_fragments": 219, "total_fragments": 1885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraflavitalea devenefica", "strain": "strain=X16", "accession": "GCA_011759375.1", "taxid": 2716334, "species_taxid": 2716334, "relation_to_type": "type", "validated": true, "ani": 76.2196, "matched_fragments": 106, "total_fragments": 1885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga rupis", "strain": "strain=DSM 21039", "accession": "GCA_900109685.1", "taxid": 573321, "species_taxid": 573321, "relation_to_type": "type", "validated": true, "ani": 75.9348, "matched_fragments": 73, "total_fragments": 1885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminibacterium soli", "strain": "strain=WSJ-3", "accession": "GCA_009939225.1", "taxid": 2698829, "species_taxid": 2698829, "relation_to_type": "type", "validated": true, "ani": 75.9019, "matched_fragments": 96, "total_fragments": 1885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella vici", "strain": "strain=DJ57", "accession": "GCA_002077945.1", "taxid": 1703345, "species_taxid": 1703345, "relation_to_type": "type", "validated": true, "ani": 75.8906, "matched_fragments": 101, "total_fragments": 1885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella caeni", "strain": "strain=HX-16-21", "accession": "GCA_004834005.1", "taxid": 2569763, "species_taxid": 2569763, "relation_to_type": "type", "validated": true, "ani": 75.7964, "matched_fragments": 97, "total_fragments": 1885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga solisilvae", "strain": "strain=O9", "accession": "GCA_009928525.1", "taxid": 1233460, "species_taxid": 1233460, "relation_to_type": "type", "validated": true, "ani": 75.7538, "matched_fragments": 56, "total_fragments": 1885, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 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