{ "type": "genome", "identifier": "GCF_000974985.2", "organism": "Streptomyces mangrovisoli", "title": "Streptomyces mangrovisoli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Malaya", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000974985.2", "bioproject": "PRJNA224116", "biosample": "SAMN03451686", "wgs_master": "LAVA00000000.2", "refseq_category": "reference genome", "taxid": "1428628", "species_taxid": "1428628", "organism_name": "Streptomyces mangrovisoli", "infraspecific_name": "strain=MUSC 149", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/04", "asm_name": "ASM97498v2", "asm_submitter": "University of Malaya", "gbrs_paired_asm": "GCA_000974985.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/974/985/GCF_000974985.2_ASM97498v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9165825", "genome_size_ungapped": "9165825", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "199", "contig_count": "199", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000974985.2-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "8005", "protein_coding_gene_count": "7768", "non_coding_gene_count": "80", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-04", "dateModified": "2016-11-04", "datePublished": "2016-11-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces mangrovisoli" ], "sample_taxid": [ "1428628" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Malaysia" ], "sample_host_location_id": [], "data_size": "2.454 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 28.0, "max": 28.0 }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9165825", "Number of Sequences": "199", "Longest Sequences (bp)": "289800", "N50 (bp)": "108867", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.5", "Number of CDSs": "7956", "Average Protein Length": "331.7", "Coding Ratio (%)": "86.4", "Number of rRNAs": "5", "Number of tRNAs": "85", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces mangrovisoli", "strain": "strain=MUSC 149", "accession": "GCA_000974985.2", "taxid": 1428628, "species_taxid": 1428628, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2950, "total_fragments": 2960, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces adustus", "strain": "strain=NBRC 109810", "accession": "GCA_009377175.1", "taxid": 1609272, "species_taxid": 1609272, "relation_to_type": "type", "validated": true, "ani": 85.1367, "matched_fragments": 1835, "total_fragments": 2960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces panaciradicis", "strain": "strain=NBRC 109811", "accession": "GCA_023516615.1", "taxid": 1470261, "species_taxid": 1470261, "relation_to_type": "type", "validated": true, "ani": 85.009, "matched_fragments": 1837, "total_fragments": 2960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces cellostaticus", "strain": "strain=DSM 40189", "accession": "GCA_001513965.1", "taxid": 67285, "species_taxid": 67285, "relation_to_type": "type", "validated": true, "ani": 84.896, "matched_fragments": 1808, "total_fragments": 2960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces galbus", "strain": "strain=DSM 40089", "accession": "GCA_005280195.1", "taxid": 33898, "species_taxid": 33898, "relation_to_type": "type", "validated": true, "ani": 84.8457, "matched_fragments": 1673, "total_fragments": 2960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces hyaluromycini", "strain": "strain=NBRC 110483", "accession": "GCA_002217755.1", "taxid": 1377993, "species_taxid": 1377993, "relation_to_type": "type", "validated": true, "ani": 84.8056, "matched_fragments": 1953, "total_fragments": 2960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces galbus", "strain": "strain=JCM 4639", "accession": "GCA_014650535.1", "taxid": 33898, "species_taxid": 33898, "relation_to_type": "type", "validated": true, "ani": 84.7805, "matched_fragments": 1699, "total_fragments": 2960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces plumbidurans", "strain": "strain=KC 17012", "accession": "GCA_019857225.1", "taxid": 2814589, "species_taxid": 2814589, "relation_to_type": "type", "validated": true, "ani": 84.7304, "matched_fragments": 1787, "total_fragments": 2960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces longwoodensis", "strain": "strain=DSM 41677", "accession": "GCA_001514125.1", "taxid": 68231, "species_taxid": 68231, "relation_to_type": "type", "validated": true, "ani": 84.7108, "matched_fragments": 1735, "total_fragments": 2960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces humi", "strain": "strain=MUSC 119", "accession": "GCA_001005085.2", "taxid": 1428620, "species_taxid": 1428620, "relation_to_type": "type", "validated": true, "ani": 84.7062, "matched_fragments": 1926, "total_fragments": 2960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces brasiliensis", "strain": "strain=JCM 3086", "accession": "GCA_014647875.1", 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84.491, "matched_fragments": 1352, "total_fragments": 2960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces shenzhenensis", "strain": "strain=DSM 42034", "accession": "GCA_021462265.1", "taxid": 943815, "species_taxid": 943815, "relation_to_type": "type", "validated": true, "ani": 84.4612, "matched_fragments": 1890, "total_fragments": 2960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces alanosinicus", "strain": "strain=JCM 4714", "accession": "GCA_014650595.1", "taxid": 68171, "species_taxid": 68171, "relation_to_type": "type", "validated": true, "ani": 84.4134, "matched_fragments": 1772, "total_fragments": 2960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces cyaneus", "strain": "strain=CGMCC 4.1671", "accession": "GCA_004028635.1", "taxid": 1904, "species_taxid": 1904, "relation_to_type": "type", "validated": true, "ani": 84.4054, "matched_fragments": 1779, "total_fragments": 2960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseostramineus", "strain": "strain=JCM 4385", "accession": "GCA_014649635.1", "taxid": 66898, "species_taxid": 66898, "relation_to_type": "suspected-type", "validated": true, "ani": 84.2989, "matched_fragments": 1613, "total_fragments": 2960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseostramineus", "strain": "strain=CECT 3273", "accession": "GCA_014203535.1", "taxid": 66898, "species_taxid": 66898, "relation_to_type": "suspected-type", "validated": true, "ani": 84.2285, "matched_fragments": 1647, "total_fragments": 2960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces calvus", "strain": "strain=CECT 3271", "accession": "GCA_014138735.1", "taxid": 67282, "species_taxid": 67282, "relation_to_type": "type", "validated": true, "ani": 84.2187, "matched_fragments": 1607, "total_fragments": 2960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces blattellae", "strain": "strain=TRM63209", "accession": "GCA_009709555.1", "taxid": 2569855, "species_taxid": 2569855, "relation_to_type": "type", "validated": true, "ani": 84.1489, "matched_fragments": 1594, "total_fragments": 2960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces pilosus", "strain": "strain=JCM 4403", "accession": "GCA_014649835.1", "taxid": 28893, "species_taxid": 28893, "relation_to_type": "type", "validated": true, "ani": 83.9341, "matched_fragments": 1553, "total_fragments": 2960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces deccanensis", "strain": "strain=KCTC 19241", "accession": "GCA_022385335.1", "taxid": 424188, "species_taxid": 424188, "relation_to_type": "type", "validated": true, "ani": 83.2885, "matched_fragments": 1691, "total_fragments": 2960, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000974985.2", "gtdb_species": "s__Streptomyces mangrovisoli", "ani": 100.0, "matched_fragments": 2950, "total_fragments": 2960, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_004346005.1", "gtdb_species": "s__Streptomyces sp004346005", "ani": 84.9396, "matched_fragments": 1844, "total_fragments": 2960, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001513965.1", "gtdb_species": "s__Streptomyces cellostaticus", "ani": 84.8875, "matched_fragments": 1810, "total_fragments": 2960, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005280195.1", "gtdb_species": "s__Streptomyces galbus", "ani": 84.8223, "matched_fragments": 1677, "total_fragments": 2960, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.26", "min_intra_species_ani": "98.53", "mean_intra_species_af": 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"status": "-" }, { "accession": "GCF_011193355.1", "gtdb_species": "s__Streptomyces sp011193355", "ani": 84.6489, "matched_fragments": 1604, "total_fragments": 2960, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014645815.1", "gtdb_species": "s__Streptomyces fuscichromogenes", "ani": 84.6184, "matched_fragments": 1902, "total_fragments": 2960, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { 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