{ "type": "genome", "identifier": "GCF_000975075.1", "organism": "Demequina lutea", "title": "Demequina lutea", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation Biological Resource Center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000975075.1", "bioproject": "PRJNA224116", "biosample": "SAMD00022566", "wgs_master": "BBRC00000000.1", "refseq_category": "na", "taxid": "431489", "species_taxid": "431489", "organism_name": "Demequina lutea", "infraspecific_name": "strain=NBRC 106155", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/02/26", "asm_name": "ASM97507v1", "asm_submitter": "National Institute of Technology and Evaluation Biological Resource Center", "gbrs_paired_asm": "GCA_000975075.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/975/075/GCF_000975075.1_ASM97507v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2643741", "genome_size_ungapped": "2643741", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "52", "contig_count": "52", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000975075.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "2581", "protein_coding_gene_count": "2469", "non_coding_gene_count": "46", "pubmed_id": "25883289" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-02-26", "dateModified": "2015-02-26", "datePublished": "2015-02-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Demequina lutea" ], "sample_taxid": [ "431489" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Norway:Adventdalen valley" ], "sample_host_location_id": [], "data_size": "0.735 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 79.17, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2643741", "Number of Sequences": "52", "Longest Sequences (bp)": "537459", "N50 (bp)": "151084", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.9", "Number of CDSs": "2549", "Average Protein Length": "308.2", "Coding Ratio (%)": "89.2", "Number of rRNAs": "0", "Number of tRNAs": "43", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Demequina lutea", "strain": "strain=DSM 19970", "accession": "GCA_013409005.1", "taxid": 431489, "species_taxid": 431489, "relation_to_type": "type", "validated": true, "ani": 99.9993, "matched_fragments": 855, "total_fragments": 857, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Demequina mangrovi", "strain": "strain=NBRC 105856", "accession": "GCA_000759715.1", "taxid": 1043493, "species_taxid": 1043493, "relation_to_type": "type", "validated": true, "ani": 78.8952, "matched_fragments": 241, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina mangrovi", "strain": "strain=DSM 24868", "accession": "GCA_900109245.1", "taxid": 1043493, "species_taxid": 1043493, "relation_to_type": "type", "validated": true, "ani": 78.8917, "matched_fragments": 246, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina maris", "strain": "strain=NBRC 109392", "accession": "GCA_000971155.1", "taxid": 1638982, "species_taxid": 1638982, "relation_to_type": "type", "validated": true, "ani": 78.8721, "matched_fragments": 245, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina subtropica", "strain": "strain=NBRC 109396", "accession": "GCA_000971235.1", "taxid": 1638989, "species_taxid": 1638989, "relation_to_type": "type", "validated": true, "ani": 78.7892, "matched_fragments": 238, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina phytophila", "strain": "strain=NBRC 109391", "accession": "GCA_000971135.1", "taxid": 1638981, "species_taxid": 1638981, "relation_to_type": "type", "validated": true, "ani": 78.7599, "matched_fragments": 226, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina soli", "strain": "strain=NBRC 109394", "accession": "GCA_000971195.1", "taxid": 1638987, "species_taxid": 1638987, "relation_to_type": "type", "validated": true, "ani": 78.7484, "matched_fragments": 253, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina rhizosphaerae", "strain": "strain=NBRC 109397", "accession": "GCA_000971255.1", "taxid": 1638985, "species_taxid": 1638985, "relation_to_type": "type", "validated": true, "ani": 78.6911, "matched_fragments": 245, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina iriomotensis", "strain": "strain=NBRC 109399", "accession": "GCA_000971395.1", "taxid": 1536641, "species_taxid": 1536641, "relation_to_type": "type", "validated": true, "ani": 78.6779, "matched_fragments": 240, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina silvatica", "strain": "strain=NBRC 109395", "accession": "GCA_000971215.1", "taxid": 1638988, "species_taxid": 1638988, "relation_to_type": "type", "validated": true, "ani": 78.4605, "matched_fragments": 250, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina pelophila", "strain": "strain=NBRC 109393", "accession": "GCA_000971175.1", "taxid": 1638984, "species_taxid": 1638984, "relation_to_type": "type", "validated": true, "ani": 78.4578, "matched_fragments": 225, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina oxidasica", "strain": "strain=NBRC 106264", "accession": "GCA_000975115.1", "taxid": 676199, "species_taxid": 676199, "relation_to_type": "type", "validated": true, "ani": 77.9114, "matched_fragments": 151, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea solisilvae", "strain": "strain=KACC 19191", "accession": "GCA_016464425.1", "taxid": 2072922, "species_taxid": 2072922, "relation_to_type": "type", "validated": true, "ani": 77.284, "matched_fragments": 174, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea subterranea", 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