{ "type": "genome", "identifier": "GCF_000975135.1", "organism": "Demequina aurantiaca", "title": "Demequina aurantiaca", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation Biological Resource Center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000975135.1", "bioproject": "PRJNA224116", "biosample": "SAMD00022563", "wgs_master": "BBRF00000000.1", "refseq_category": "reference genome", "taxid": "676200", "species_taxid": "676200", "organism_name": "Demequina aurantiaca", "infraspecific_name": "strain=NBRC 106265", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/02/26", "asm_name": "ASM97513v1", "asm_submitter": "National Institute of Technology and Evaluation Biological Resource Center", "gbrs_paired_asm": "GCA_000975135.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/975/135/GCF_000975135.1_ASM97513v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2565694", "genome_size_ungapped": "2564888", "gc_percent": "64.500000", "replicon_count": "0", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000975135.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "2355", "protein_coding_gene_count": "2295", "non_coding_gene_count": "52", "pubmed_id": "25883289" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-02-26", "dateModified": "2015-02-26", "datePublished": "2015-02-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Demequina aurantiaca" ], "sample_taxid": [ "676200" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan:Shizuoka,Hamanako" ], "sample_host_location_id": [], "data_size": "0.716 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2565694", "Number of Sequences": "6", "Longest Sequences (bp)": "1866714", "N50 (bp)": "1866714", "Gap Ratio (%)": "0.031415", "GCcontent (%)": "64.6", "Number of CDSs": "2314", "Average Protein Length": "340.9", "Coding Ratio (%)": "92.2", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Demequina aurantiaca", "strain": "strain=NBRC 106265", "accession": "GCA_000975135.1", "taxid": 676200, "species_taxid": 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78.8461, "matched_fragments": 293, "total_fragments": 852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina phytophila", "strain": "strain=NBRC 109391", "accession": "GCA_000971135.1", "taxid": 1638981, "species_taxid": 1638981, "relation_to_type": "type", "validated": true, "ani": 78.8355, "matched_fragments": 302, "total_fragments": 852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina mangrovi", "strain": "strain=DSM 24868", "accession": "GCA_900109245.1", "taxid": 1043493, "species_taxid": 1043493, "relation_to_type": "type", "validated": true, "ani": 78.8034, "matched_fragments": 303, "total_fragments": 852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina mangrovi", "strain": "strain=NBRC 105856", "accession": "GCA_000759715.1", "taxid": 1043493, "species_taxid": 1043493, "relation_to_type": "type", "validated": true, "ani": 78.7925, "matched_fragments": 300, "total_fragments": 852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina rhizosphaerae", "strain": "strain=NBRC 109397", "accession": "GCA_000971255.1", "taxid": 1638985, "species_taxid": 1638985, "relation_to_type": "type", "validated": true, "ani": 78.739, "matched_fragments": 323, "total_fragments": 852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina iriomotensis", "strain": "strain=NBRC 109399", "accession": "GCA_000971395.1", "taxid": 1536641, "species_taxid": 1536641, "relation_to_type": "type", "validated": true, "ani": 78.6581, "matched_fragments": 330, "total_fragments": 852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina pelophila", "strain": "strain=NBRC 109393", "accession": "GCA_000971175.1", "taxid": 1638984, "species_taxid": 1638984, "relation_to_type": "type", "validated": true, "ani": 78.6567, "matched_fragments": 290, "total_fragments": 852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina gelatinilytica", "strain": "strain=NBRC 109390", "accession": "GCA_000971115.1", "taxid": 1638980, "species_taxid": 1638980, "relation_to_type": "type", "validated": true, "ani": 78.6491, "matched_fragments": 311, "total_fragments": 852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina silvatica", "strain": "strain=NBRC 109395", "accession": "GCA_000971215.1", "taxid": 1638988, "species_taxid": 1638988, "relation_to_type": "type", "validated": true, "ani": 78.4865, "matched_fragments": 334, "total_fragments": 852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina salsinemoris", "strain": "strain=NBRC 105323", "accession": "GCA_000974805.1", "taxid": 577470, "species_taxid": 577470, "relation_to_type": "type", "validated": true, "ani": 78.3998, "matched_fragments": 279, "total_fragments": 852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sunyaminii", 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