{ "type": "genome", "identifier": "GCF_000975155.1", "organism": "Demequina globuliformis", "title": "Demequina globuliformis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation Biological Resource Center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000975155.1", "bioproject": "PRJNA224116", "biosample": "SAMD00022565", "wgs_master": "BBRG00000000.1", "refseq_category": "reference genome", "taxid": "676202", "species_taxid": "676202", "organism_name": "Demequina globuliformis", "infraspecific_name": "strain=NBRC 106266", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/02/26", "asm_name": "ASM97515v1", "asm_submitter": "National Institute of Technology and Evaluation Biological Resource Center", "gbrs_paired_asm": "GCA_000975155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/975/155/GCF_000975155.1_ASM97515v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2622354", "genome_size_ungapped": "2621520", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "8", "contig_count": "8", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000975155.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "2482", "protein_coding_gene_count": "2423", "non_coding_gene_count": "55", "pubmed_id": "25883289" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-02-26", "dateModified": "2015-02-26", "datePublished": "2015-02-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Demequina globuliformis" ], "sample_taxid": [ "676202" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan:Ehime,Shimohisage" ], "sample_host_location_id": [], "data_size": "0.726 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2622354", "Number of Sequences": "8", "Longest Sequences (bp)": "1829653", "N50 (bp)": "1829653", "Gap Ratio (%)": "0.031803", "GCcontent (%)": "66.3", "Number of CDSs": "2457", "Average Protein Length": "327.7", "Coding Ratio (%)": "92.1", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Demequina globuliformis", "strain": "strain=NBRC 106266", "accession": "GCA_000975155.1", "taxid": 676202, "species_taxid": 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869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina silvatica", "strain": "strain=NBRC 109395", "accession": "GCA_000971215.1", "taxid": 1638988, "species_taxid": 1638988, "relation_to_type": "type", "validated": true, "ani": 78.8188, "matched_fragments": 325, "total_fragments": 869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina gelatinilytica", "strain": "strain=NBRC 109390", "accession": "GCA_000971115.1", "taxid": 1638980, "species_taxid": 1638980, "relation_to_type": "type", "validated": true, "ani": 78.6338, "matched_fragments": 308, "total_fragments": 869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sedimenti", "strain": "strain=MIC A30", "accession": "GCA_011750795.2", "taxid": 2694931, "species_taxid": 2694931, "relation_to_type": "type", "validated": true, "ani": 77.349, "matched_fragments": 88, "total_fragments": 869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Georgenia wutianyii", "strain": "strain=Z294", "accession": "GCA_006349365.1", "taxid": 2585135, "species_taxid": 2585135, "relation_to_type": "type", "validated": true, "ani": 76.9852, "matched_fragments": 139, "total_fragments": 869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas xylanilytica", "strain": "strain=NBRC 101102", "accession": "GCA_007989805.1", "taxid": 233583, "species_taxid": 233583, "relation_to_type": "type", "validated": true, "ani": 76.9081, "matched_fragments": 156, "total_fragments": 869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter cheniae", "strain": "strain=Hz2", "accession": "GCA_003602275.1", "taxid": 1258888, "species_taxid": 1258888, "relation_to_type": "type", "validated": true, "ani": 76.8008, "matched_fragments": 85, "total_fragments": 869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serinicoccus marinus", "strain": 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