{ "type": "genome", "identifier": "GCF_000978515.1", "organism": "Kitasatospora aureofaciens", "title": "Kitasatospora aureofaciens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "USDA/ARS/NCAUR", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000978515.1", "bioproject": "PRJNA224116", "biosample": "SAMN03491044", "wgs_master": "LBHA00000000.1", "refseq_category": "na", "taxid": "1894", "species_taxid": "1894", "organism_name": "Kitasatospora aureofaciens", "infraspecific_name": "strain=NRRL 2209", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/04/22", "asm_name": "ASM97851v1", "asm_submitter": "USDA/ARS/NCAUR", "gbrs_paired_asm": "GCA_000978515.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/978/515/GCF_000978515.1_ASM97851v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9078694", "genome_size_ungapped": "9078694", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "989", "contig_count": "989", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000978515.1-RS_2024_05_26", "annotation_date": "2024-05-26", "total_gene_count": "8429", "protein_coding_gene_count": "7906", "non_coding_gene_count": "78", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-04-22", "dateModified": "2015-04-22", "datePublished": "2015-04-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Kitasatospora aureofaciens" ], "sample_taxid": [ "1894" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:Missouri" ], "sample_host_location_id": [], "data_size": "2.430 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 5.21, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9078694", "Number of Sequences": "989", "Longest Sequences (bp)": "72752", "N50 (bp)": "14661", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.7", "Number of CDSs": "7626", "Average Protein Length": "302.6", "Coding Ratio (%)": "76.3", "Number of rRNAs": "3", "Number of tRNAs": "94", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kitasatospora aureofaciens", "strain": "strain=NRRL 2209", "accession": "GCA_000978515.1", "taxid": 1894, "species_taxid": 1894, "relation_to_type": "type", "validated": true, "ani": 99.9929, "matched_fragments": 2491, "total_fragments": 2525, "ani_threshold": 95, "status": "conclusive" }, { 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