{
    "type": "genome",
    "identifier": "GCF_000983115.1",
    "organism": "Syntrophomonas zehnderi OL-4",
    "title": "Syntrophomonas zehnderi OL-4",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WAGENINGEN UNIVERSITY",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000983115.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA3281413",
        "wgs_master": "CGIH00000000.1",
        "refseq_category": "reference genome",
        "taxid": "690567",
        "species_taxid": "404335",
        "organism_name": "Syntrophomonas zehnderi OL-4",
        "infraspecific_name": "strain=OL-4",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/04/24",
        "asm_name": "Syntrophomonas Zehnderi OL-4",
        "asm_submitter": "WAGENINGEN UNIVERSITY",
        "gbrs_paired_asm": "GCA_000983115.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/983/115/GCF_000983115.1_Syntrophomonas_Zehnderi_OL-4",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2944717",
        "genome_size_ungapped": "2943145",
        "gc_percent": "44.500000",
        "replicon_count": "0",
        "scaffold_count": "53",
        "contig_count": "53",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000983115.1-RS_2024_04_12",
        "annotation_date": "2024-04-12",
        "total_gene_count": "2837",
        "protein_coding_gene_count": "2722",
        "non_coding_gene_count": "60",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-04-24",
    "dateModified": "2015-04-24",
    "datePublished": "2015-04-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Syntrophomonas zehnderi OL-4"
        ],
        "sample_taxid": [
            "690567"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.838 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 25.0,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2944717",
        "Number of Sequences": "53",
        "Longest Sequences (bp)": "305609",
        "N50 (bp)": "110825",
        "Gap Ratio (%)": "0.053384",
        "GCcontent (%)": "44.7",
        "Number of CDSs": "2718",
        "Average Protein Length": "306.0",
        "Coding Ratio (%)": "84.7",
        "Number of rRNAs": "6",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Syntrophomonas zehnderi",
                "strain": "strain=OL-4",
                "accession": "GCA_000983115.1",
                "taxid": 404335,
                "species_taxid": 404335,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 933,
                "total_fragments": 958,
                "ani_threshold": 95,
                "status": "conclusive"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 25.0,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000983115.1",
                "gtdb_species": "s__Syntrophomonas_B zehnderi",
                "ani": 100.0,
                "matched_fragments": 933,
                "total_fragments": 958,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Syntrophomonadia;o__Syntrophomonadales;f__Syntrophomonadaceae;g__Syntrophomonas_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_012729495.1",
                "gtdb_species": "s__Syntrophomonas_B sp012729495",
                "ani": 77.4114,
                "matched_fragments": 106,
                "total_fragments": 958,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Syntrophomonadia;o__Syntrophomonadales;f__Syntrophomonadaceae;g__Syntrophomonas_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002840245.1",
                "gtdb_species": "s__PHAA01 sp002840245",
                "ani": 76.9519,
                "matched_fragments": 65,
                "total_fragments": 958,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Syntrophomonadia;o__Syntrophomonadales;f__Syntrophomonadaceae;g__PHAA01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002408445.1",
                "gtdb_species": "s__UBA4851 sp002408445",
                "ani": 76.5841,
                "matched_fragments": 51,
                "total_fragments": 958,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Syntrophomonadia;o__Syntrophomonadales;f__Syntrophomonadaceae;g__UBA4851",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.19",
                "min_intra_species_ani": "98.86",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.72",
                "num_clustered_genomes": 7,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
        "cell_length": 0.72,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 31.0,
        "optimum_ph": 7.0,
        "genome_size": 2941008.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Syntrophomonas",
        "zehnderi",
        "OL-4"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}