{ "type": "genome", "identifier": "GCF_000986785.1", "organism": "Mesobacillus campisalis", "title": "Mesobacillus campisalis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Microbial Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000986785.1", "bioproject": "PRJNA224116", "biosample": "SAMN03454233", "wgs_master": "LAYY00000000.1", "refseq_category": "reference genome", "taxid": "1408103", "species_taxid": "1408103", "organism_name": "Mesobacillus campisalis", "infraspecific_name": "strain=SA2-6", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/05/01", "asm_name": "ASM98678v1", "asm_submitter": "Institute of Microbial Technology", "gbrs_paired_asm": "GCA_000986785.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/986/785/GCF_000986785.1_ASM98678v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5182058", "genome_size_ungapped": "5182018", "gc_percent": "45.500000", "replicon_count": "0", "scaffold_count": "102", "contig_count": "102", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000986785.1-RS_2024_04_02", "annotation_date": "2024-04-02", "total_gene_count": "5191", "protein_coding_gene_count": "4931", "non_coding_gene_count": "205", "pubmed_id": "26296567" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-05-01", "dateModified": "2015-05-01", "datePublished": "2015-05-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Mesobacillus campisalis" ], "sample_taxid": [ "1408103" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India: Kanyakumari" ], "sample_host_location_id": [], "data_size": "1.475 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5182058", "Number of Sequences": "102", "Longest Sequences (bp)": "485273", "N50 (bp)": "173403", "Gap Ratio (%)": "0.000772", "GCcontent (%)": "45.4", "Number of CDSs": "5012", "Average Protein Length": "289.8", "Coding Ratio (%)": "84.1", "Number of rRNAs": "16", "Number of tRNAs": "119", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mesobacillus campisalis", "strain": "strain=SA2-6", "accession": "GCA_000986785.1", "taxid": 1408103, "species_taxid": 1408103, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1676, "total_fragments": 1681, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mesobacillus foraminis", "strain": "strain=CV53", "accession": "GCA_013618915.1", "taxid": 279826, "species_taxid": 279826, "relation_to_type": "type", "validated": true, "ani": 78.1986, "matched_fragments": 338, "total_fragments": 1681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesobacillus foraminis", "strain": "strain=CV53", "accession": "GCA_004340465.1", "taxid": 279826, "species_taxid": 279826, "relation_to_type": "type", "validated": true, "ani": 78.0855, "matched_fragments": 335, "total_fragments": 1681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cytobacillus firmus", "strain": "strain=NCTC10335", "accession": "GCA_900445365.1", "taxid": 1399, "species_taxid": 1399, "relation_to_type": "suspected-type", "validated": true, "ani": 77.9727, "matched_fragments": 163, "total_fragments": 1681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus xiapuensis", "strain": "strain=FJAT-46582", "accession": "GCA_002797355.1", "taxid": 2014075, "species_taxid": 2014075, "relation_to_type": "type", "validated": true, "ani": 77.849, "matched_fragments": 58, "total_fragments": 1681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesobacillus subterraneus", "strain": "strain=DSM 13966", "accession": "GCA_003937825.1", "taxid": 285983, "species_taxid": 285983, "relation_to_type": "suspected-type", "validated": true, "ani": 77.6131, "matched_fragments": 215, "total_fragments": 1681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus licheniformis", "strain": "strain=DSM 13", "accession": "GCA_022630555.1", "taxid": 1402, "species_taxid": 1402, "relation_to_type": "type", "validated": true, "ani": 77.5561, "matched_fragments": 59, "total_fragments": 1681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesobacillus selenatarsenatis", "strain": "strain=SF-1", "accession": "GCA_000813125.1", "taxid": 388741, "species_taxid": 388741, "relation_to_type": "type", "validated": true, "ani": 77.49, "matched_fragments": 210, "total_fragments": 1681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus mesonae", "strain": "strain=FJAT-13985", "accession": "GCA_001636315.1", "taxid": 1193713, "species_taxid": 1193713, "relation_to_type": "type", "validated": true, "ani": 77.3522, "matched_fragments": 129, "total_fragments": 1681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus vallismortis", "strain": "strain=DV1-F-3", "accession": "GCA_000245315.1", "taxid": 72361, "species_taxid": 72361, "relation_to_type": "type", "validated": true, "ani": 77.3238, "matched_fragments": 50, "total_fragments": 1681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesobacillus boroniphilus", "strain": "strain=JCM 21738", "accession": "GCA_001315165.1", "taxid": 308892, "species_taxid": 308892, "relation_to_type": "type", "validated": true, "ani": 77.2832, "matched_fragments": 214, "total_fragments": 1681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus notoginsengisoli", "strain": "strain=JCM 30743", "accession": "GCA_003515685.1", "taxid": 1578198, "species_taxid": 1578198, "relation_to_type": "type", "validated": true, "ani": 77.1946, "matched_fragments": 129, "total_fragments": 1681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cytobacillus firmus", "strain": "strain=NBRC 15306", "accession": "GCA_001591465.1", "taxid": 1399, "species_taxid": 1399, "relation_to_type": "suspected-type", "validated": true, "ani": 77.1445, "matched_fragments": 149, "total_fragments": 1681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus citreus", "strain": "strain=FJAT-50051", "accession": "GCA_018343545.2", "taxid": 2833578, "species_taxid": 2833578, "relation_to_type": "type", "validated": true, "ani": 76.9976, "matched_fragments": 163, "total_fragments": 1681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus salipaludis", "strain": "strain=WN066", "accession": "GCA_004358205.1", "taxid": 2547811, "species_taxid": 2547811, "relation_to_type": "type", "validated": true, "ani": 76.986, "matched_fragments": 133, "total_fragments": 1681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus salacetis", "strain": "strain=SKP7-4", "accession": "GCA_003581585.1", "taxid": 2315464, "species_taxid": 2315464, "relation_to_type": "type", "validated": true, "ani": 76.7472, "matched_fragments": 78, "total_fragments": 1681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niallia taxi", "strain": "strain=M5HDSG1-1", "accession": "GCA_004005475.1", "taxid": 2499688, "species_taxid": 2499688, "relation_to_type": "type", "validated": true, "ani": 76.5683, "matched_fragments": 91, "total_fragments": 1681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus kokaensis", "strain": "strain=LOB 377", "accession": "GCA_014656545.1", "taxid": 2759023, "species_taxid": 2759023, "relation_to_type": "type", "validated": true, "ani": 76.5667, "matched_fragments": 126, "total_fragments": 1681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jeotgalibacillus aurantiacus", "strain": "strain=T12", "accession": "GCA_020595125.1", "taxid": 2763266, "species_taxid": 2763266, "relation_to_type": "type", "validated": true, "ani": 76.5465, "matched_fragments": 54, "total_fragments": 1681, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000986785.1", "gtdb_species": "s__Bacillus_AZ campisalis", "ani": 100.0, "matched_fragments": 1676, "total_fragments": 1681, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Bacillus_AZ", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_001273925.1", "gtdb_species": "s__Bacillus_AZ sp001273925", "ani": 92.8557, "matched_fragments": 1364, "total_fragments": 1681, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Bacillus_AZ", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004340465.1", "gtdb_species": "s__Bacillus_AZ foraminis", "ani": 78.0751, "matched_fragments": 336, "total_fragments": 1681, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Bacillus_AZ", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.82", "min_intra_species_ani": "96.47", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.88", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_900109925.1", "gtdb_species": "s__Bacillus_AZ persicus", "ani": 77.951, "matched_fragments": 275, "total_fragments": 1681, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Bacillus_AZ", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900111815.1", "gtdb_species": "s__Bacillus_AZ mediterraneensis", "ani": 77.9408, "matched_fragments": 159, "total_fragments": 1681, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Bacillus_AZ", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001274725.1", "gtdb_species": "s__Cytobacillus globisporus", "ani": 77.724, "matched_fragments": 165, "total_fragments": 1681, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000473245.1", "gtdb_species": "s__Bacillus_AB infantis", "ani": 77.7208, "matched_fragments": 170, "total_fragments": 1681, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Bacillus_AB", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.14", "min_intra_species_ani": "95.38", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.87", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_002874535.1", "gtdb_species": "s__Mesobacillus jeotgali", "ani": 77.7124, "matched_fragments": 232, "total_fragments": 1681, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Mesobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003937825.1", "gtdb_species": "s__Mesobacillus subterraneus", "ani": 77.5874, "matched_fragments": 215, "total_fragments": 1681, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Mesobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000294775.2", "gtdb_species": "s__Cytobacillus oceanisediminis_B", "ani": 77.5291, "matched_fragments": 189, "total_fragments": 1681, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.75", "min_intra_species_ani": "98.26", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.83", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_018613055.1", "gtdb_species": "s__Mesobacillus sp018613055", "ani": 77.483, "matched_fragments": 220, "total_fragments": 1681, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Mesobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000813125.1", "gtdb_species": "s__Mesobacillus selenatarsenatis", "ani": 77.456, "matched_fragments": 210, "total_fragments": 1681, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Mesobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900166585.1", "gtdb_species": "s__Mesobacillus jeotgali_A", "ani": 77.4275, "matched_fragments": 225, "total_fragments": 1681, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Mesobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012163115.1", "gtdb_species": "s__Mesobacillus selenatarsenatis_A", "ani": 77.378, "matched_fragments": 219, "total_fragments": 1681, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Mesobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001038755.1", "gtdb_species": "s__Cytobacillus firmus_B", "ani": 77.3656, "matched_fragments": 164, "total_fragments": 1681, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.85", "min_intra_species_ani": "96.97", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.91", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_000934845.1", "gtdb_species": "s__Mesobacillus subterraneus_A", "ani": 77.3201, "matched_fragments": 140, "total_fragments": 1681, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Mesobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002860205.1", "gtdb_species": "s__T33-2 sp002860205", "ani": 77.2951, "matched_fragments": 201, "total_fragments": 1681, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__T33-2", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001591805.1", "gtdb_species": "s__Neobacillus novalis", "ani": 76.7896, "matched_fragments": 129, "total_fragments": 1681, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002272245.1", "gtdb_species": "s__Neobacillus sp002272245", "ani": 76.5977, "matched_fragments": 114, "total_fragments": 1681, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.06", "min_intra_species_ani": "97.06", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_013396335.1", "gtdb_species": "s__Neobacillus sp013396335", "ani": 76.5667, "matched_fragments": 127, "total_fragments": 1681, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Mesobacillus", "campisalis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }