{ "type": "genome", "identifier": "GCF_000993785.3", "organism": "Streptomyces xiamenensis", "title": "Streptomyces xiamenensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shanghai Jiao Tong University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000993785.3", "bioproject": "PRJNA224116", "biosample": "SAMN03332981", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "408015", "species_taxid": "408015", "organism_name": "Streptomyces xiamenensis", "infraspecific_name": "strain=MCCC 1A01550", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/19", "asm_name": "ASM99378v3", "asm_submitter": "Shanghai Jiao Tong University", "gbrs_paired_asm": "GCA_000993785.3", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/993/785/GCF_000993785.3_ASM99378v3", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5961402", "genome_size_ungapped": "5961402", "gc_percent": "72.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000993785.3-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "5452", "protein_coding_gene_count": "5232", "non_coding_gene_count": "77", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-19", "dateModified": "2019-08-19", "datePublished": "2019-08-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces xiamenensis" ], "sample_taxid": [ "408015" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Xiamen" ], "sample_host_location_id": [], "data_size": "1.592 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5961402", "Number of Sequences": "1", "Longest Sequences (bp)": "5961402", "N50 (bp)": "5961402", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.0", "Number of CDSs": "5520", "Average Protein Length": "323.7", "Coding Ratio (%)": "89.9", "Number of rRNAs": "15", "Number of tRNAs": "69", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces xiamenensis", "strain": "strain=318", "accession": "GCA_000993785.3", "taxid": 408015, "species_taxid": 408015, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1987, 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"below_threshold" }, { "organism_name": "Streptomyces radicis", "strain": "strain=DS1-2", "accession": "GCA_003626575.1", "taxid": 1750517, "species_taxid": 1750517, "relation_to_type": "type", "validated": true, "ani": 80.4585, "matched_fragments": 1093, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces carminius", "strain": "strain=TRM SA0054", "accession": "GCA_002794255.1", "taxid": 2665496, "species_taxid": 2665496, "relation_to_type": "type", "validated": true, "ani": 80.417, "matched_fragments": 936, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces pini", "strain": "strain=PL19", "accession": "GCA_900114215.1", "taxid": 1520580, "species_taxid": 1520580, "relation_to_type": "type", "validated": true, "ani": 80.3978, "matched_fragments": 926, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lichenis", "strain": "strain=LCR6-01", "accession": "GCA_023218175.1", "taxid": 2306967, "species_taxid": 2306967, "relation_to_type": "type", "validated": true, "ani": 79.8849, "matched_fragments": 946, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces sudanensis", "strain": "strain=SD 504", "accession": "GCA_023614315.1", "taxid": 436397, "species_taxid": 436397, "relation_to_type": "type", "validated": true, "ani": 79.771, "matched_fragments": 784, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces sennicomposti", "strain": "strain=RCPT1-4", "accession": "GCA_019890635.1", "taxid": 2873384, "species_taxid": 2873384, "relation_to_type": "type", "validated": true, "ani": 79.7556, "matched_fragments": 900, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces chumphonensis", "strain": "strain=KK1-2", "accession": "GCA_014779715.1", "taxid": 1214925, "species_taxid": 1214925, "relation_to_type": "type", "validated": true, "ani": 79.7426, "matched_fragments": 849, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces monomycini", "strain": "strain=NRRL B-24309", "accession": "GCA_022271435.1", "taxid": 371720, "species_taxid": 371720, "relation_to_type": "type", "validated": true, "ani": 79.6103, "matched_fragments": 956, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces californicus", "strain": "strain=FDAARGOS_1209", "accession": "GCA_016906185.1", "taxid": 67351, "species_taxid": 67351, "relation_to_type": "type", "validated": true, "ani": 79.4987, "matched_fragments": 956, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces californicus", "strain": "strain=NRRL B-2098", "accession": "GCA_000717645.1", "taxid": 67351, 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