{ "type": "genome", "identifier": "GCF_001005145.1", "organism": "Jiangella alkaliphila", "title": "Jiangella alkaliphila", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Yunnan Institute of Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001005145.1", "bioproject": "PRJNA224116", "biosample": "SAMN03497963", "wgs_master": "LBMC00000000.1", "refseq_category": "na", "taxid": "419479", "species_taxid": "419479", "organism_name": "Jiangella alkaliphila", "infraspecific_name": "strain=KCTC 19222", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/05/08", "asm_name": "ASM100514v1", "asm_submitter": "Yunnan Institute of Microbiology", "gbrs_paired_asm": "GCA_001005145.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/005/145/GCF_001005145.1_ASM100514v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7567836", "genome_size_ungapped": "7567314", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "124", "contig_count": "162", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001005145.1-RS_2024_12_10", "annotation_date": "2024-12-10", "total_gene_count": "7172", "protein_coding_gene_count": "6970", "non_coding_gene_count": "58", "pubmed_id": "26139721" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-05-08", "dateModified": "2015-05-08", "datePublished": "2015-05-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Jiangella alkaliphila" ], "sample_taxid": [ "419479" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Jeju" ], "sample_host_location_id": [], "data_size": "2.004 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7567836", "Number of Sequences": "124", "Longest Sequences (bp)": "540613", "N50 (bp)": "169179", "Gap Ratio (%)": "0.006898", "GCcontent (%)": "72.2", "Number of CDSs": "7088", "Average Protein Length": "324.4", "Coding Ratio (%)": "91.1", "Number of rRNAs": "1", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Jiangella alkaliphila", "strain": "strain=KCTC 19222", "accession": "GCA_001005145.1", "taxid": 419479, "species_taxid": 419479, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2468, "total_fragments": 2473, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Jiangella alkaliphila", "strain": "strain=DSM 45079", "accession": "GCA_900105925.1", "taxid": 419479, "species_taxid": 419479, "relation_to_type": "type", "validated": true, "ani": 99.9934, "matched_fragments": 2472, "total_fragments": 2473, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Jiangella muralis", "strain": "strain=DSM 45357", "accession": "GCA_001270745.1", "taxid": 702383, "species_taxid": 702383, "relation_to_type": "type", "validated": true, "ani": 89.5388, "matched_fragments": 1690, "total_fragments": 2473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella aurantiaca", "strain": "strain=8K307", "accession": "GCA_004349105.1", "taxid": 2530373, "species_taxid": 2530373, "relation_to_type": "type", "validated": true, "ani": 89.532, "matched_fragments": 1633, "total_fragments": 2473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella endophytica", "strain": "strain=KE2-3", "accession": "GCA_003427025.1", "taxid": 1623398, "species_taxid": 1623398, "relation_to_type": "type", "validated": true, "ani": 89.5277, "matched_fragments": 1827, "total_fragments": 2473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella alba", "strain": "strain=DSM 45237", "accession": "GCA_900106035.1", "taxid": 561176, "species_taxid": 561176, "relation_to_type": "type", "validated": true, "ani": 89.3711, "matched_fragments": 1793, "total_fragments": 2473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella alba", "strain": "strain=YIM 61503", "accession": "GCA_001708125.1", "taxid": 561176, "species_taxid": 561176, "relation_to_type": "type", "validated": true, "ani": 89.3598, "matched_fragments": 1783, "total_fragments": 2473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella anatolica", "strain": "strain=GTF31", "accession": 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2762242, "relation_to_type": "type", "validated": true, "ani": 76.3809, "matched_fragments": 536, "total_fragments": 2473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerisporangium corydalis", "strain": "strain=NEAU-YHS15", "accession": "GCA_025506355.1", "taxid": 1441875, "species_taxid": 1441875, "relation_to_type": "type", "validated": true, "ani": 76.2996, "matched_fragments": 764, "total_fragments": 2473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter melonis", "strain": "strain=NBRC107855", "accession": "GCA_020567375.1", "taxid": 262209, "species_taxid": 262209, "relation_to_type": "type", "validated": true, "ani": 76.2568, "matched_fragments": 496, "total_fragments": 2473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces spinosus", "strain": "strain=SBTS01", "accession": "GCA_020400655.1", "taxid": 2872623, "species_taxid": 2872623, "relation_to_type": "type", "validated": 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