{
    "type": "genome",
    "identifier": "GCF_001006285.1",
    "organism": "Paraclostridium benzoelyticum",
    "title": "Paraclostridium benzoelyticum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "UoH",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001006285.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03396706",
        "wgs_master": "LBBT00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1629550",
        "species_taxid": "1629550",
        "organism_name": "Paraclostridium benzoelyticum",
        "infraspecific_name": "strain=JC272",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/05/13",
        "asm_name": "ASM100628v1",
        "asm_submitter": "UoH",
        "gbrs_paired_asm": "GCA_001006285.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/006/285/GCF_001006285.1_ASM100628v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3555957",
        "genome_size_ungapped": "3555957",
        "gc_percent": "28.500000",
        "replicon_count": "0",
        "scaffold_count": "368",
        "contig_count": "368",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001006285.1-RS_2024_12_13",
        "annotation_date": "2024-12-13",
        "total_gene_count": "3624",
        "protein_coding_gene_count": "3449",
        "non_coding_gene_count": "138",
        "pubmed_id": "26067979"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-05-13",
    "dateModified": "2015-05-13",
    "datePublished": "2015-05-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paraclostridium benzoelyticum"
        ],
        "sample_taxid": [
            "1629550"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "India: Gujarat"
        ],
        "sample_host_location_id": [],
        "data_size": "0.974 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3555957",
        "Number of Sequences": "368",
        "Longest Sequences (bp)": "82664",
        "N50 (bp)": "18784",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "28.3",
        "Number of CDSs": "3394",
        "Average Protein Length": "294.8",
        "Coding Ratio (%)": "84.4",
        "Number of rRNAs": "14",
        "Number of tRNAs": "102",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Paraclostridium benzoelyticum",
                "strain": "strain=JC272",
                "accession": "GCA_001006285.1",
                "taxid": 1629550,
                "species_taxid": 1629550,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9999,
                "matched_fragments": 993,
                "total_fragments": 1009,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Paraclostridium bifermentans",
                "strain": "strain=ATCC 638",
                "accession": "GCA_006802875.1",
                "taxid": 1490,
                "species_taxid": 1490,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.4525,
                "matched_fragments": 882,
                "total_fragments": 1009,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Paraclostridium dentum",
                "strain": "strain=SKVG24",
                "accession": "GCA_012922555.1",
                "taxid": 2662455,
                "species_taxid": 2662455,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 871,
                "total_fragments": 1009,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Paraclostridium bifermentans subsp. muricolitidis",
                "strain": "strain=PAGU 1678",
                "accession": "GCA_019650315.1",
                "taxid": 2663173,
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 853,
                "total_fragments": 1009,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Paraclostridium bifermentans",
                "strain": "strain=DSM 14991",
                "accession": "GCA_019916025.1",
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                "species_taxid": 1490,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.5954,
                "matched_fragments": 868,
                "total_fragments": 1009,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraclostridium bifermentans",
                "strain": "strain=ATCC 638",
                "accession": "GCA_000452245.2",
                "taxid": 1490,
                "species_taxid": 1490,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.554,
                "matched_fragments": 877,
                "total_fragments": 1009,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001006285.1",
                "gtdb_species": "s__Paraclostridium benzoelyticum",
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                "matched_fragments": 990,
                "total_fragments": 1009,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Paraclostridium",
                "ani_circumscription_radius": 95.4733,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
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                "total_fragments": 1009,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Paraclostridium",
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                "num_clustered_genomes": 14,
                "status": "-"
            },
            {
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                "total_fragments": 1009,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Paraclostridium",
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                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_015668515.1",
                "gtdb_species": "s__Paraclostridium tenue",
                "ani": 83.561,
                "matched_fragments": 614,
                "total_fragments": 1009,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Paraclostridium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.58",
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                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_000953675.1",
                "gtdb_species": "s__Paraclostridium sordellii",
                "ani": 83.0154,
                "matched_fragments": 615,
                "total_fragments": 1009,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Paraclostridium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.12",
                "min_intra_species_ani": "96.78",
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                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 59,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "cell_length": 0.204,
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        "sporulation": 1.0,
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        "bacillus_cell_shape": 1.0,
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    },
    "_genome_taxon": [
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        "benzoelyticum"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}