{ "type": "genome", "identifier": "GCF_001006765.1", "organism": "Staphylococcus succinus subsp. succinus", "title": "Staphylococcus succinus subsp. succinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Jiamusi University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001006765.1", "bioproject": "PRJNA224116", "biosample": "SAMN03603322", "wgs_master": "LCSH00000000.1", "refseq_category": "na", "taxid": "224030", "species_taxid": "61015", "organism_name": "Staphylococcus succinus subsp. succinus", "infraspecific_name": "strain=DSM 14617", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/05/14", "asm_name": "ASM100676v1", "asm_submitter": "Jiamusi University", "gbrs_paired_asm": "GCA_001006765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/006/765/GCF_001006765.1_ASM100676v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2887686", "genome_size_ungapped": "2887686", "gc_percent": "33.000000", "replicon_count": "0", "scaffold_count": "162", "contig_count": "162", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001006765.1-RS_2024_10_21", "annotation_date": "2024-10-21", "total_gene_count": "2885", "protein_coding_gene_count": "2741", "non_coding_gene_count": "74", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-05-14", "dateModified": "2015-05-14", "datePublished": "2015-05-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Staphylococcus succinus subsp. succinus" ], "sample_taxid": [ "224030" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Dominican Republic" ], "sample_host_location_id": [], "data_size": "0.810 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2887686", "Number of Sequences": "162", "Longest Sequences (bp)": "391901", "N50 (bp)": "241537", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "32.9", "Number of CDSs": "2731", "Average Protein Length": "290.2", "Coding Ratio (%)": "82.3", "Number of rRNAs": "1", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Staphylococcus succinus subsp. succinus", "strain": "strain=DSM 14617", "accession": "GCA_001006765.1", "taxid": 224030, "species_taxid": 61015, "relation_to_type": "type", "validated": true, "ani": 100.0, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus saprophyticus", "strain": "strain=NCTC7292", "accession": "GCA_900458885.1", "taxid": 29385, "species_taxid": 29385, "relation_to_type": "type", "validated": true, "ani": 81.2679, "matched_fragments": 518, "total_fragments": 926, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus saprophyticus", "strain": "strain=NCTC 7292", "accession": "GCA_002902025.2", "taxid": 29385, "species_taxid": 29385, "relation_to_type": "type", "validated": true, "ani": 81.2421, "matched_fragments": 503, "total_fragments": 926, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus shinii", "strain": "strain=K22-5M", "accession": "GCA_017583065.1", "taxid": 2912228, "species_taxid": 2912228, "relation_to_type": "type", "validated": true, "ani": 81.0854, "matched_fragments": 535, "total_fragments": 926, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus gallinarum", "strain": "strain=DSM 20610", "accession": "GCA_000875895.1", "taxid": 1293, "species_taxid": 1293, "relation_to_type": "type", "validated": true, "ani": 80.6445, "matched_fragments": 524, "total_fragments": 926, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus caeli", "strain": "strain=82B", "accession": "GCA_900097965.1", "taxid": 2201815, "species_taxid": 2201815, "relation_to_type": "type", "validated": true, "ani": 80.5459, "matched_fragments": 464, "total_fragments": 926, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus gallinarum", "strain": "strain=NCTC 12195", "accession": "GCA_003968815.1", "taxid": 1293, "species_taxid": 1293, "relation_to_type": "type", "validated": true, "ani": 80.3718, "matched_fragments": 448, "total_fragments": 926, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus aureus", "strain": "strain=PartF-Saureus-RM8376", "accession": "GCA_022869625.1", "taxid": 1280, "species_taxid": 1280, "relation_to_type": "type", "validated": true, "ani": 78.3214, "matched_fragments": 255, "total_fragments": 926, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus aureus", "strain": "strain=NCTC 08532", "accession": "GCA_002902205.1", "taxid": 1280, "species_taxid": 1280, "relation_to_type": "type", "validated": true, "ani": 78.2982, "matched_fragments": 250, "total_fragments": 926, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001006765.1", "gtdb_species": "s__Staphylococcus succinus", "ani": 100.0, "matched_fragments": 922, "total_fragments": 926, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus", "ani_circumscription_radius": 95.0, 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"psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.029, "coccus_cell_shape": 0.97, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Staphylococcus", "succinus", "subsp.", "succinus" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }