{ "type": "genome", "identifier": "GCF_001010285.1", "organism": "Photorhabdus thracensis", "title": "Photorhabdus thracensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyungpook National University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001010285.1", "bioproject": "PRJNA224116", "biosample": "SAMN03433286", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "230089", "species_taxid": "230089", "organism_name": "Photorhabdus thracensis", "infraspecific_name": "strain=DSM 15199", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/05/19", "asm_name": "ASM101028v1", "asm_submitter": "Kyungpook National University", "gbrs_paired_asm": "GCA_001010285.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/010/285/GCF_001010285.1_ASM101028v1", 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"sample_host_disease_id": [], "sample_host_location": [ "Turkey" ], "sample_host_location_id": [], "data_size": "1.443 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5147098", "Number of Sequences": "1", "Longest Sequences (bp)": "5147098", "N50 (bp)": "5147098", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.1", "Number of CDSs": "4501", "Average Protein Length": "315.2", "Coding Ratio (%)": "82.7", "Number of rRNAs": "22", "Number of tRNAs": "77", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Photorhabdus thracensis", "strain": "strain=DSM 15199", "accession": "GCA_001010285.1", "taxid": 230089, "species_taxid": 230089, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1707, "total_fragments": 1715, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Photorhabdus temperata", "strain": "strain=DSM 14550", "accession": "GCA_025384845.1", "taxid": 574560, "species_taxid": 574560, "relation_to_type": "type", "validated": true, "ani": 95.7888, "matched_fragments": 1324, "total_fragments": 1715, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Photorhabdus stackebrandtii", "strain": "strain=DSM 23271", "accession": "GCA_011189495.1", "taxid": 1123042, "species_taxid": 1123042, "relation_to_type": "type", "validated": true, "ani": 93.2524, "matched_fragments": 1273, "total_fragments": 1715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Photorhabdus khanii subsp. guanajuatensis", "strain": "strain=MEX20-17", "accession": "GCA_004348755.1", "taxid": 2100166, "species_taxid": 1004150, "relation_to_type": "type", "validated": true, "ani": 93.2496, "matched_fragments": 1307, 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"below_threshold" }, { "organism_name": "Photorhabdus kleinii", "strain": "strain=DSM 23513", "accession": "GCA_025384885.1", "taxid": 768034, "species_taxid": 768034, "relation_to_type": "type", "validated": true, "ani": 86.7835, "matched_fragments": 1180, "total_fragments": 1715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Photorhabdus noenieputensis", "strain": "strain=DSM 25462", "accession": "GCA_023108895.1", "taxid": 1208607, "species_taxid": 1208607, "relation_to_type": "type", "validated": true, "ani": 86.3871, "matched_fragments": 1244, "total_fragments": 1715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Photorhabdus hindustanensis", "strain": "strain=H1", "accession": "GCA_002968995.1", "taxid": 2918802, "species_taxid": 2918802, "relation_to_type": "type", "validated": true, "ani": 86.1534, "matched_fragments": 1179, "total_fragments": 1715, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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