{
    "type": "genome",
    "identifier": "GCF_001010355.1",
    "organism": "Dyella japonica DSM 16301",
    "title": "Dyella japonica DSM 16301",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "McMaster University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001010355.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02894429",
        "wgs_master": "JPLA00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1440762",
        "species_taxid": "231455",
        "organism_name": "Dyella japonica DSM 16301",
        "infraspecific_name": "strain=DSM 16301",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/05/19",
        "asm_name": "ASM101035v1",
        "asm_submitter": "McMaster University",
        "gbrs_paired_asm": "GCA_001010355.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/010/355/GCF_001010355.1_ASM101035v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4237705",
        "genome_size_ungapped": "4237705",
        "gc_percent": "64.000000",
        "replicon_count": "0",
        "scaffold_count": "217",
        "contig_count": "217",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001010355.1-RS_2024_05_05",
        "annotation_date": "2024-05-05",
        "total_gene_count": "3804",
        "protein_coding_gene_count": "3726",
        "non_coding_gene_count": "52",
        "pubmed_id": "25481407"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-05-19",
    "dateModified": "2015-05-19",
    "datePublished": "2015-05-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Dyella japonica DSM 16301"
        ],
        "sample_taxid": [
            "1440762"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan: Tokyo"
        ],
        "sample_host_location_id": [],
        "data_size": "1.179 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 93.75,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4237705",
        "Number of Sequences": "217",
        "Longest Sequences (bp)": "250417",
        "N50 (bp)": "114180",
        "Gap Ratio (%)": "0.001038",
        "GCcontent (%)": "64.1",
        "Number of CDSs": "3661",
        "Average Protein Length": "335.6",
        "Coding Ratio (%)": "87.0",
        "Number of rRNAs": "3",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Dyella japonica",
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                "relation_to_type": "type",
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            },
            {
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                "accession": "GCA_016905005.1",
                "taxid": 1242174,
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                "matched_fragments": 1062,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
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                "organism_name": "Dyella telluris",
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                "organism_name": "Dyella solisilvae",
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                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Dyella amyloliquefaciens",
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                "species_taxid": 1770545,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Frateuria flava",
                "strain": "strain=MAH-13",
                "accession": "GCA_017837635.1",
                "taxid": 2821489,
                "species_taxid": 2821489,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dyella acidiphila",
                "strain": "strain=7MK23",
                "accession": "GCA_014863405.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tahibacter caeni",
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                "accession": "GCA_024609805.1",
                "taxid": 1453545,
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            }
        ],
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            "strain_heterogeneity": 0.0
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                "accession": "GCF_001010355.1",
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                "matched_fragments": 1350,
                "total_fragments": 1351,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Dyella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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            {
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                "num_clustered_genomes": 1,
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            {
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        ]
    },
    "_bac2feature": {
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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        "16301"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}