{ "type": "genome", "identifier": "GCF_001010945.1", "organism": "Aurantiacibacter luteus", "title": "Aurantiacibacter luteus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Third Institute of State Oceanic Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001010945.1", "bioproject": "PRJNA224116", "biosample": "SAMN03480690", "wgs_master": "LBHB00000000.1", "refseq_category": "reference genome", "taxid": "1581420", "species_taxid": "1581420", "organism_name": "Aurantiacibacter luteus", "infraspecific_name": "strain=KA37", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/05/20", "asm_name": "ASM101094v1", "asm_submitter": "The Third Institute of State Oceanic Administration", "gbrs_paired_asm": "GCA_001010945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/010/945/GCF_001010945.1_ASM101094v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2887216", "genome_size_ungapped": "2887216", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "22", "contig_count": "22", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001010945.1-RS_2024_04_02", "annotation_date": "2024-04-02", "total_gene_count": "2900", "protein_coding_gene_count": "2836", "non_coding_gene_count": "52", "pubmed_id": "25911535" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-05-20", "dateModified": "2015-05-20", "datePublished": "2015-05-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Aurantiacibacter luteus" ], "sample_taxid": [ "1581420" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Xhangjiakou, Fujian Province" ], "sample_host_location_id": [], "data_size": "0.790 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2887216", "Number of Sequences": "22", "Longest Sequences (bp)": "1340291", "N50 (bp)": "1064700", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.2", "Number of CDSs": "2839", "Average Protein Length": "311.7", "Coding Ratio (%)": "92.0", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aurantiacibacter luteus", "strain": "strain=KA37", "accession": "GCA_001010945.1", "taxid": 1581420, 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"status": "below_threshold" }, { "organism_name": "Pelagerythrobacter aerophilus", "strain": "strain=Ery1", "accession": "GCA_003581645.1", "taxid": 2306995, "species_taxid": 2306995, "relation_to_type": "type", "validated": true, "ani": 79.3802, "matched_fragments": 429, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteriqipengyuania abyssalis", "strain": "strain=NZ-12B", "accession": "GCA_019857185.1", "taxid": 2860200, "species_taxid": 2860200, "relation_to_type": "type", "validated": true, "ani": 79.0379, "matched_fragments": 435, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter rhizosphaerae", "strain": "strain=GH3-10", "accession": "GCA_009807005.1", "taxid": 2691582, "species_taxid": 2691582, "relation_to_type": "type", "validated": true, "ani": 78.961, "matched_fragments": 474, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteraurantiacibacter aestuarii", "strain": "strain=JCM 16339", "accession": "GCA_009827405.1", "taxid": 650004, "species_taxid": 650004, "relation_to_type": "type", "validated": true, "ani": 78.6064, "matched_fragments": 295, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium marinum", "strain": "strain=CGMCC 1.12918", "accession": "GCA_014640055.1", "taxid": 1514948, "species_taxid": 1514948, "relation_to_type": "type", "validated": true, "ani": 78.5706, "matched_fragments": 326, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium ferulae", "strain": "strain=SX2RGS8", "accession": "GCA_003660445.1", "taxid": 1854641, "species_taxid": 1854641, "relation_to_type": "type", "validated": true, "ani": 78.5223, "matched_fragments": 370, "total_fragments": 956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter 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