{
    "type": "genome",
    "identifier": "GCF_001012775.1",
    "organism": "Brevibacillus formosus",
    "title": "Brevibacillus formosus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Fujian Academy of Agricultural Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001012775.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03700042",
        "wgs_master": "LDCN00000000.1",
        "refseq_category": "reference genome",
        "taxid": "54913",
        "species_taxid": "54913",
        "organism_name": "Brevibacillus formosus",
        "infraspecific_name": "strain=DSM 9885",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/05/22",
        "asm_name": "ASM101277v1",
        "asm_submitter": "Fujian Academy of Agricultural Sciences",
        "gbrs_paired_asm": "GCA_001012775.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/012/775/GCF_001012775.1_ASM101277v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6215362",
        "genome_size_ungapped": "6212749",
        "gc_percent": "47.500000",
        "replicon_count": "0",
        "scaffold_count": "26",
        "contig_count": "26",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001012775.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "5848",
        "protein_coding_gene_count": "5626",
        "non_coding_gene_count": "160",
        "pubmed_id": "26205874"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-05-22",
    "dateModified": "2015-05-22",
    "datePublished": "2015-05-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Brevibacillus formosus"
        ],
        "sample_taxid": [
            "54913"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Fuzhou"
        ],
        "sample_host_location_id": [],
        "data_size": "1.770 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 8.33,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6215362",
        "Number of Sequences": "26",
        "Longest Sequences (bp)": "1166708",
        "N50 (bp)": "759282",
        "Gap Ratio (%)": "0.042041",
        "GCcontent (%)": "47.4",
        "Number of CDSs": "5749",
        "Average Protein Length": "317.1",
        "Coding Ratio (%)": "88.0",
        "Number of rRNAs": "4",
        "Number of tRNAs": "149",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Brevibacillus formosus",
                "strain": "strain=DSM 9885",
                "accession": "GCA_001012775.1",
                "taxid": 54913,
                "species_taxid": 54913,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2057,
                "total_fragments": 2060,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Brevibacillus formosus",
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                "accession": "GCA_003013405.1",
                "taxid": 54913,
                "species_taxid": 54913,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9732,
                "matched_fragments": 2023,
                "total_fragments": 2060,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Brevibacillus formosus",
                "strain": "strain=NBRC 15716",
                "accession": "GCA_006540185.1",
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                "species_taxid": 54913,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9514,
                "matched_fragments": 2004,
                "total_fragments": 2060,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Brevibacillus brevis",
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                "accession": "GCA_003012835.1",
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                "species_taxid": 1393,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 93.9062,
                "matched_fragments": 1830,
                "total_fragments": 2060,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevibacillus brevis",
                "strain": "strain=NCTC2611",
                "accession": "GCA_900637055.1",
                "taxid": 1393,
                "species_taxid": 1393,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 93.892,
                "matched_fragments": 1840,
                "total_fragments": 2060,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevibacillus porteri",
                "strain": "strain=NRRL B-41110",
                "accession": "GCA_003013475.1",
                "taxid": 2126350,
                "species_taxid": 2126350,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.1626,
                "matched_fragments": 1748,
                "total_fragments": 2060,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevibacillus antibioticus",
                "strain": "strain=TGS2-1",
                "accession": "GCA_005217615.1",
                "taxid": 2570228,
                "species_taxid": 2570228,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.0421,
                "matched_fragments": 1699,
                "total_fragments": 2060,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevibacillus marinus",
                "strain": "strain=SCSIO 07484",
                "accession": "GCA_003963515.1",
                "taxid": 2496837,
                "species_taxid": 2496837,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9275,
                "matched_fragments": 76,
                "total_fragments": 2060,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 8.33,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003013405.1",
                "gtdb_species": "s__Brevibacillus formosus",
                "ani": 99.9732,
                "matched_fragments": 2023,
                "total_fragments": 2060,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.07",
                "min_intra_species_ani": "95.45",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 6,
                "status": "conclusive"
            },
            {
                "accession": "GCF_013284355.1",
                "gtdb_species": "s__Brevibacillus sp013284355",
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                "matched_fragments": 1831,
                "total_fragments": 2060,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900637055.1",
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                "matched_fragments": 1840,
                "total_fragments": 2060,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus",
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                "mean_intra_species_ani": "99.71",
                "min_intra_species_ani": "98.86",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_000282075.1",
                "gtdb_species": "s__Brevibacillus sp000282075",
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                "matched_fragments": 1766,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus",
                "ani_circumscription_radius": 95.0,
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                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
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            },
            {
                "accession": "GCF_001039275.2",
                "gtdb_species": "s__Brevibacillus brevis_C",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus",
                "ani_circumscription_radius": 95.0,
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            },
            {
                "accession": "GCF_000010165.1",
                "gtdb_species": "s__Brevibacillus brevis_D",
                "ani": 93.4449,
                "matched_fragments": 1811,
                "total_fragments": 2060,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus",
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                "status": "-"
            },
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            },
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
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        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 1.0,
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        "coccobacillus_cell_shape": 0.0,
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    },
    "_genome_taxon": [
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        "formosus"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}