{
    "type": "genome",
    "identifier": "GCF_001015055.1",
    "organism": "Aneurinibacillus tyrosinisolvens",
    "title": "Aneurinibacillus tyrosinisolvens",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Japan Agency for Marine-Earth Science and Technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001015055.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00028761",
        "wgs_master": "BBWZ00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1443435",
        "species_taxid": "1443435",
        "organism_name": "Aneurinibacillus tyrosinisolvens",
        "infraspecific_name": "strain=LL-002",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/04/18",
        "asm_name": "ASM101505v1",
        "asm_submitter": "Japan Agency for Marine-Earth Science and Technology",
        "gbrs_paired_asm": "GCA_001015055.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/015/055/GCF_001015055.1_ASM101505v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5693818",
        "genome_size_ungapped": "5693818",
        "gc_percent": "44.500000",
        "replicon_count": "0",
        "scaffold_count": "136",
        "contig_count": "136",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001015055.1-RS_2024_08_08",
        "annotation_date": "2024-08-08",
        "total_gene_count": "6095",
        "protein_coding_gene_count": "5644",
        "non_coding_gene_count": "131",
        "pubmed_id": "26021921"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-04-18",
    "dateModified": "2015-04-18",
    "datePublished": "2015-04-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Aneurinibacillus tyrosinisolvens"
        ],
        "sample_taxid": [
            "1443435"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan:Kagoshima, Kagoshima Bay"
        ],
        "sample_host_location_id": [],
        "data_size": "1.628 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 8.33,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5693818",
        "Number of Sequences": "136",
        "Longest Sequences (bp)": "414016",
        "N50 (bp)": "116063",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "44.5",
        "Number of CDSs": "6034",
        "Average Protein Length": "262.3",
        "Coding Ratio (%)": "83.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "123",
        "Number of CRISPRs": "7"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Aneurinibacillus tyrosinisolvens",
                "strain": "strain=LL-002",
                "accession": "GCA_001015055.1",
                "taxid": 1443435,
                "species_taxid": 1443435,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1825,
                "total_fragments": 1832,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aneurinibacillus terranovensis",
                "strain": "strain=DSM 18919",
                "accession": "GCA_000430625.1",
                "taxid": 278991,
                "species_taxid": 278991,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.053,
                "matched_fragments": 207,
                "total_fragments": 1832,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aneurinibacillus danicus",
                "strain": "strain=NBRC 102444",
                "accession": "GCA_007991215.1",
                "taxid": 267746,
                "species_taxid": 267746,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6495,
                "matched_fragments": 214,
                "total_fragments": 1832,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aneurinibacillus migulanus",
                "strain": "strain=DSM 2895",
                "accession": "GCA_001274715.1",
                "taxid": 47500,
                "species_taxid": 47500,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5972,
                "matched_fragments": 188,
                "total_fragments": 1832,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aneurinibacillus migulanus",
                "strain": "strain=NCTC 7096",
                "accession": "GCA_000878905.1",
                "taxid": 47500,
                "species_taxid": 47500,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5561,
                "matched_fragments": 191,
                "total_fragments": 1832,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aneurinibacillus migulanus",
                "strain": "strain=DSM 2895",
                "accession": "GCA_900100065.1",
                "taxid": 47500,
                "species_taxid": 47500,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4924,
                "matched_fragments": 186,
                "total_fragments": 1832,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aneurinibacillus migulanus",
                "strain": "strain=NBRC 15520",
                "accession": "GCA_006539965.1",
                "taxid": 47500,
                "species_taxid": 47500,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4088,
                "matched_fragments": 183,
                "total_fragments": 1832,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 8.33,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001015055.1",
                "gtdb_species": "s__Aneurinibacillus_A tyrosinisolvens",
                "ani": 100.0,
                "matched_fragments": 1825,
                "total_fragments": 1832,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Aneurinibacillales;f__Aneurinibacillaceae;g__Aneurinibacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000430625.1",
                "gtdb_species": "s__Aneurinibacillus_B terranovensis",
                "ani": 78.0746,
                "matched_fragments": 205,
                "total_fragments": 1832,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Aneurinibacillales;f__Aneurinibacillaceae;g__Aneurinibacillus_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007991215.1",
                "gtdb_species": "s__Aneurinibacillus danicus",
                "ani": 77.6647,
                "matched_fragments": 213,
                "total_fragments": 1832,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Aneurinibacillales;f__Aneurinibacillaceae;g__Aneurinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.16",
                "min_intra_species_ani": "99.16",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001274715.1",
                "gtdb_species": "s__Aneurinibacillus migulanus",
                "ani": 77.6183,
                "matched_fragments": 188,
                "total_fragments": 1832,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Aneurinibacillales;f__Aneurinibacillaceae;g__Aneurinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.46",
                "min_intra_species_ani": "98.76",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_000466385.1",
                "gtdb_species": "s__Aneurinibacillus aneurinilyticus",
                "ani": 77.61,
                "matched_fragments": 161,
                "total_fragments": 1832,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Aneurinibacillales;f__Aneurinibacillaceae;g__Aneurinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.57",
                "min_intra_species_ani": "99.14",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900099925.1",
                "gtdb_species": "s__Aneurinibacillus thermoaerophilus",
                "ani": 77.4045,
                "matched_fragments": 145,
                "total_fragments": 1832,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Aneurinibacillales;f__Aneurinibacillaceae;g__Aneurinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.68",
                "min_intra_species_ani": "99.68",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.065,
        "cell_length": 0.481,
        "doubling_h": null,
        "growth_tmp": 37.9,
        "optimum_tmp": 35.5,
        "optimum_ph": 6.25,
        "genome_size": 5679374.0,
        "gc_content": 44.253,
        "coding_genes": 3859.0,
        "rRNA16S_genes": 17.0,
        "tRNA_genes": 169.0,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 0.666,
        "thermophilic_range_tmp": 0.333,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Aneurinibacillus",
        "tyrosinisolvens"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}