{ "type": "genome", "identifier": "GCF_001017175.1", "organism": "Microvirga vignae", "title": "Microvirga vignae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Embrapa Agrobiologia", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001017175.1", "bioproject": "PRJNA224116", "biosample": "SAMN03652542", "wgs_master": "LCYG00000000.1", "refseq_category": "reference genome", "taxid": "1225564", "species_taxid": "1225564", "organism_name": "Microvirga vignae", "infraspecific_name": "strain=BR3299", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/06/01", "asm_name": "ASM101717v1", "asm_submitter": "Embrapa Agrobiologia", "gbrs_paired_asm": "GCA_001017175.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/017/175/GCF_001017175.1_ASM101717v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6472445", "genome_size_ungapped": "6470921", "gc_percent": "61.000000", "replicon_count": "0", "scaffold_count": "165", "contig_count": "165", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001017175.1-RS_2024_04_24", "annotation_date": "2024-04-24", "total_gene_count": "6334", "protein_coding_gene_count": "5984", "non_coding_gene_count": "62", "pubmed_id": "26159523" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-06-01", "dateModified": "2015-06-01", "datePublished": "2015-06-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Microvirga vignae" ], "sample_taxid": [ "1225564" ], "sample_host_organism": [ "Vigna unguiculata" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil" ], "sample_host_location_id": [], "data_size": "1.833 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6472445", "Number of Sequences": "165", "Longest Sequences (bp)": "389614", "N50 (bp)": "99306", "Gap Ratio (%)": "0.023840", "GCcontent (%)": "61.1", "Number of CDSs": "6413", "Average Protein Length": "277.8", "Coding Ratio (%)": "82.6", "Number of rRNAs": "3", "Number of tRNAs": "57", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Microvirga vignae", "strain": "strain=BR3299", "accession": "GCA_001017175.1", "taxid": 1225564, "species_taxid": 1225564, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2066, "total_fragments": 2076, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Microvirga pakistanensis", "strain": "strain=NCCP-1258", "accession": "GCA_004458765.1", "taxid": 1682650, "species_taxid": 1682650, "relation_to_type": "type", "validated": true, "ani": 84.0841, "matched_fragments": 1047, "total_fragments": 2076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga guangxiensis", "strain": "strain=CGMCC 1.7666", "accession": "GCA_900102135.1", "taxid": 549386, "species_taxid": 549386, "relation_to_type": "type", "validated": true, "ani": 84.0054, "matched_fragments": 958, "total_fragments": 2076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga makkahensis", "strain": "strain=KCTC 23863", "accession": "GCA_009830105.1", "taxid": 1128670, "species_taxid": 1128670, "relation_to_type": "type", "validated": true, "ani": 83.6457, "matched_fragments": 1013, "total_fragments": 2076, "ani_threshold": 95, "status": "below_threshold" }, { 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