{ "type": "genome", "identifier": "GCF_001017775.3", "organism": "Pandoraea thiooxydans", "title": "Pandoraea thiooxydans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Malaya", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001017775.3", "bioproject": "PRJNA224116", "biosample": "SAMN03754653", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "445709", "species_taxid": "445709", "organism_name": "Pandoraea thiooxydans", "infraspecific_name": "strain=DSM 25325", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/21", "asm_name": "ASM101777v3", "asm_submitter": "University of Malaya", "gbrs_paired_asm": "GCA_001017775.3", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/017/775/GCF_001017775.3_ASM101777v3", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4464186", "genome_size_ungapped": "4464186", "gc_percent": "63.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001017775.3-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "4160", "protein_coding_gene_count": "4054", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-21", "dateModified": "2016-11-21", "datePublished": "2016-11-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Pandoraea thiooxydans" ], "sample_taxid": [ "445709" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Jung Ha-dong" ], "sample_host_location_id": [], "data_size": "1.238 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4464186", "Number of Sequences": "1", "Longest Sequences (bp)": "4464186", "N50 (bp)": "4464186", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.2", "Number of CDSs": "4105", "Average Protein Length": "323.4", "Coding Ratio (%)": "89.2", "Number of rRNAs": "6", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pandoraea thiooxydans", "strain": "strain=DSM 25325", "accession": "GCA_001017775.3", "taxid": 445709, "species_taxid": 445709, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1488, "total_fragments": 1488, "ani_threshold": 95, 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"taxid": 93220, "species_taxid": 93220, "relation_to_type": "type", "validated": true, "ani": 78.2737, "matched_fragments": 492, "total_fragments": 1488, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pandoraea bronchicola", "strain": "strain=LMG 20603", "accession": "GCA_902459805.1", "taxid": 2508287, "species_taxid": 2508287, "relation_to_type": "type", "validated": true, "ani": 78.2386, "matched_fragments": 424, "total_fragments": 1488, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pandoraea morbifera", "strain": "strain=LMG 31116", "accession": "GCA_902459575.1", "taxid": 2508300, "species_taxid": 2508300, "relation_to_type": "type", "validated": true, "ani": 78.1795, "matched_fragments": 471, "total_fragments": 1488, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pandoraea sputorum", "strain": "strain=DSM 21091", "accession": "GCA_000814845.2", "taxid": 93222, "species_taxid": 93222, "relation_to_type": 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