{ "type": "genome", "identifier": "GCF_001020985.1", "organism": "Corynebacterium mustelae", "title": "Corynebacterium mustelae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Bielefeld University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001020985.1", "bioproject": "PRJNA224116", "biosample": "SAMN03568800", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "571915", "species_taxid": "571915", "organism_name": "Corynebacterium mustelae", "infraspecific_name": "strain=DSM 45274", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/06/05", "asm_name": "ASM102098v1", "asm_submitter": "Bielefeld University", "gbrs_paired_asm": "GCA_001020985.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/020/985/GCF_001020985.1_ASM102098v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3474226", "genome_size_ungapped": "3474226", "gc_percent": "52.500000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001020985.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3157", "protein_coding_gene_count": "3071", "non_coding_gene_count": "70", "pubmed_id": "26358597" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-06-05", "dateModified": "2015-06-05", "datePublished": "2015-06-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium mustelae" ], "sample_taxid": [ "571915" ], "sample_host_organism": [ "Mustela putorius furo" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.992 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3474226", "Number of Sequences": "3", "Longest Sequences (bp)": "3391554", "N50 (bp)": "3391554", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.6", "Number of CDSs": "3090", "Average Protein Length": "325.1", "Coding Ratio (%)": "86.7", "Number of rRNAs": "12", "Number of tRNAs": "56", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium mustelae", "strain": "strain=DSM 45274", "accession": "GCA_001020985.1", "taxid": 571915, "species_taxid": 571915, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1149, "total_fragments": 1157, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corynebacterium ulcerans", "strain": "strain=NCTC7910", "accession": "GCA_900187135.1", "taxid": 65058, "species_taxid": 65058, "relation_to_type": "type", "validated": true, "ani": 79.555, "matched_fragments": 76, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium ulcerans", "strain": "strain=FDAARGOS_1118", "accession": "GCA_016727365.1", "taxid": 65058, "species_taxid": 65058, "relation_to_type": "type", "validated": true, "ani": 79.5074, "matched_fragments": 74, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium diphtheriae", "strain": "strain=NCTC11397", "accession": "GCA_001457455.1", "taxid": 1717, "species_taxid": 1717, "relation_to_type": "type", "validated": true, "ani": 79.1979, "matched_fragments": 91, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium diphtheriae", "strain": "", "accession": "GCA_902809765.1", "taxid": 1717, "species_taxid": 1717, "relation_to_type": "type", "validated": true, "ani": 79.1089, "matched_fragments": 91, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium diphtheriae subsp. diphtheriae", "strain": "strain=FDAARGOS_1554", "accession": "GCA_020736085.1", "taxid": 2315257, "species_taxid": 1717, "relation_to_type": "type", "validated": true, "ani": 79.076, "matched_fragments": 88, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium vitaeruminis", "strain": "strain=DSM 20294", "accession": "GCA_000550805.1", "taxid": 38305, "species_taxid": 38305, "relation_to_type": "type", "validated": true, "ani": 78.7133, "matched_fragments": 100, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium rouxii", "strain": "strain=FRC0190", "accession": "GCA_902702935.1", "taxid": 2719119, "species_taxid": 2719119, "relation_to_type": "type", "validated": true, "ani": 78.3172, "matched_fragments": 92, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium diphtheriae", "strain": "strain=DSM 44123", "accession": "GCA_001913265.1", "taxid": 1717, "species_taxid": 1717, "relation_to_type": "type", "validated": true, "ani": 78.077, "matched_fragments": 84, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium silvaticum", "strain": "strain=KL0182", "accession": "GCA_004382825.2", "taxid": 2320431, "species_taxid": 2320431, "relation_to_type": "type", "validated": true, "ani": 77.8071, "matched_fragments": 73, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium matruchotii", "strain": "strain=ATCC 14266", "accession": "GCA_000175375.1", "taxid": 43768, "species_taxid": 43768, "relation_to_type": "type", "validated": true, "ani": 77.5146, "matched_fragments": 113, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium phoceense", "strain": "strain=MC1", "accession": "GCA_900092335.1", "taxid": 1686286, "species_taxid": 1686286, "relation_to_type": "type", "validated": true, "ani": 77.4701, "matched_fragments": 55, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001020985.1", "gtdb_species": "s__Corynebacterium mustelae", "ani": 100.0, "matched_fragments": 1145, "total_fragments": 1157, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_900187135.1", "gtdb_species": "s__Corynebacterium ulcerans", "ani": 79.6122, "matched_fragments": 74, "total_fragments": 1157, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.24", "min_intra_species_ani": "95.82", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.95", "num_clustered_genomes": 38, "status": "-" }, { "accession": "GCF_001457455.1", "gtdb_species": "s__Corynebacterium diphtheriae", "ani": 79.2012, "matched_fragments": 92, "total_fragments": 1157, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.05", "min_intra_species_ani": "95.03", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.83", "num_clustered_genomes": 346, "status": "-" }, { "accession": "GCF_002355155.1", "gtdb_species": "s__Corynebacterium suranareeae", "ani": 79.1028, "matched_fragments": 69, "total_fragments": 1157, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002563965.1", "gtdb_species": "s__Corynebacterium renale", "ani": 79.048, "matched_fragments": 65, "total_fragments": 1157, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.02", "min_intra_species_ani": "98.07", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.94", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_001586215.1", "gtdb_species": "s__Corynebacterium simulans", "ani": 78.768, "matched_fragments": 67, "total_fragments": 1157, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.78", "min_intra_species_ani": "97.47", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCF_000011325.1", "gtdb_species": "s__Corynebacterium glutamicum", "ani": 78.7414, "matched_fragments": 74, "total_fragments": 1157, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.67", "min_intra_species_ani": "97.34", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.85", "num_clustered_genomes": 76, "status": "-" }, { "accession": "GCF_000550805.1", "gtdb_species": "s__Corynebacterium vitaeruminis", "ani": 78.6272, "matched_fragments": 100, "total_fragments": 1157, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.86", "min_intra_species_ani": "98.60", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_902702935.1", "gtdb_species": "s__Corynebacterium rouxii", "ani": 78.5587, "matched_fragments": 91, "total_fragments": 1157, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004114895.1", "gtdb_species": "s__Corynebacterium pelargi", "ani": 78.4915, "matched_fragments": 94, "total_fragments": 1157, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004382825.2", "gtdb_species": "s__Corynebacterium silvaticum", "ani": 77.8528, "matched_fragments": 72, "total_fragments": 1157, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.94", "min_intra_species_ani": "99.78", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_900092335.1", "gtdb_species": "s__Corynebacterium phoceense", "ani": 77.4667, "matched_fragments": 55, "total_fragments": 1157, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.96", "min_intra_species_ani": "96.08", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.92", "num_clustered_genomes": 11, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.275, "cell_length": 0.068, "doubling_h": -0.089, "growth_tmp": 37.0, "optimum_tmp": 35.173, "optimum_ph": 7.292, "genome_size": 3474226.8, "gc_content": 53.194, "coding_genes": 3053.667, "rRNA16S_genes": 4.0, "tRNA_genes": 53.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.75, "facultative_respiration": 1.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Corynebacterium", "mustelae" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }