{ "type": "genome", "identifier": "GCF_001021025.1", "organism": "Corynebacterium epidermidicanis", "title": "Corynebacterium epidermidicanis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Bielefeld University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001021025.1", "bioproject": "PRJNA224116", "biosample": "SAMN03462986", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1050174", "species_taxid": "1050174", "organism_name": "Corynebacterium epidermidicanis", "infraspecific_name": "strain=DSM 45586", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/06/05", "asm_name": "ASM102102v1", "asm_submitter": "Bielefeld University", "gbrs_paired_asm": "GCA_001021025.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/021/025/GCF_001021025.1_ASM102102v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2692072", "genome_size_ungapped": "2692072", "gc_percent": "58.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001021025.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "2501", "protein_coding_gene_count": "2405", "non_coding_gene_count": "67", "pubmed_id": "26294641" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-06-05", "dateModified": "2015-06-05", "datePublished": "2015-06-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium epidermidicanis" ], "sample_taxid": [ "1050174" ], "sample_host_organism": [ "Canis lupus familiaris" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.765 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2692072", "Number of Sequences": "1", "Longest Sequences (bp)": "2692072", "N50 (bp)": "2692072", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.1", "Number of CDSs": "2484", "Average Protein Length": "317.2", "Coding Ratio (%)": "87.8", "Number of rRNAs": "12", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium epidermidicanis", "strain": "strain=DSM 45586", "accession": "GCA_001021025.1", "taxid": 1050174, "species_taxid": 1050174, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 896, "total_fragments": 897, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corynebacterium kalinowskii", "strain": "strain=1959", "accession": "GCA_009734385.1", "taxid": 2675216, "species_taxid": 2675216, "relation_to_type": "type", "validated": true, "ani": 79.6525, "matched_fragments": 261, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium hindlerae", "strain": "strain=NML 93-0612", "accession": "GCA_014117265.1", "taxid": 699041, "species_taxid": 699041, "relation_to_type": "type", "validated": true, "ani": 79.6355, "matched_fragments": 258, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium glutamicum", "strain": "strain=ATCC 13032", "accession": "GCA_000011325.1", "taxid": 1718, "species_taxid": 1718, "relation_to_type": "type", "validated": true, "ani": 79.1092, "matched_fragments": 124, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium camporealensis", "strain": "strain=DSM 44610", "accession": "GCA_000980815.1", "taxid": 161896, "species_taxid": 161896, "relation_to_type": "type", "validated": true, "ani": 79.0853, "matched_fragments": 140, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium glutamicum", "strain": "strain=ATCC 13032", "accession": "GCA_002847405.1", "taxid": 1718, "species_taxid": 1718, "relation_to_type": "type", "validated": true, "ani": 78.9795, "matched_fragments": 120, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium aquilae", "strain": "strain=S-613", "accession": "GCA_001941445.1", "taxid": 203263, "species_taxid": 203263, "relation_to_type": "type", "validated": true, "ani": 78.8663, "matched_fragments": 134, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium sanguinis", "strain": "strain=CCUG 58655", "accession": "GCA_007641235.1", "taxid": 2594913, "species_taxid": 2594913, "relation_to_type": "type", "validated": true, "ani": 78.4153, "matched_fragments": 116, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium mycetoides", "strain": "strain=DSM 20632", "accession": "GCA_900103625.1", "taxid": 38302, "species_taxid": 38302, "relation_to_type": "type", "validated": true, "ani": 78.246, "matched_fragments": 124, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium vitaeruminis", "strain": "strain=DSM 20294", "accession": "GCA_000550805.1", "taxid": 38305, "species_taxid": 38305, "relation_to_type": "type", "validated": true, "ani": 78.1689, "matched_fragments": 187, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium humireducens", "strain": "strain=DSM 45392", "accession": "GCA_000819445.1", "taxid": 1223514, "species_taxid": 1223514, "relation_to_type": "type", "validated": true, "ani": 77.8149, "matched_fragments": 166, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium lipophiloflavum", "strain": "strain=DSM 44291", "accession": "GCA_000159635.1", "taxid": 161889, "species_taxid": 161889, "relation_to_type": "type", "validated": true, "ani": 77.6882, "matched_fragments": 114, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium pollutisoli", "strain": "strain=VDS11", "accession": "GCA_900177745.1", "taxid": 1610489, "species_taxid": 1610489, "relation_to_type": "type", "validated": true, "ani": 77.4593, "matched_fragments": 147, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium humireducens", "strain": "strain=NBRC 106098", "accession": "GCA_001571025.1", "taxid": 1223514, "species_taxid": 1223514, "relation_to_type": "type", "validated": true, "ani": 77.2748, "matched_fragments": 159, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001021025.1", "gtdb_species": "s__Corynebacterium epidermidicanis", "ani": 100.0, "matched_fragments": 897, "total_fragments": 897, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_014117265.1", "gtdb_species": "s__Corynebacterium sp014117265", "ani": 79.7325, "matched_fragments": 257, "total_fragments": 897, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.31", "min_intra_species_ani": "97.31", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009734385.1", "gtdb_species": "s__Corynebacterium sp009734385", "ani": 79.6152, "matched_fragments": 259, "total_fragments": 897, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000011325.1", "gtdb_species": "s__Corynebacterium glutamicum", "ani": 79.0799, "matched_fragments": 123, "total_fragments": 897, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.67", "min_intra_species_ani": "97.34", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.85", "num_clustered_genomes": 76, "status": "-" }, { "accession": "GCF_001941445.1", "gtdb_species": "s__Corynebacterium aquilae", "ani": 78.8693, "matched_fragments": 134, "total_fragments": 897, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000011305.1", "gtdb_species": "s__Corynebacterium efficiens", "ani": 78.4295, "matched_fragments": 147, "total_fragments": 897, "gtdb_taxonomy": 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