{ "type": "genome", "identifier": "GCF_001021065.1", "organism": "Corynebacterium uterequi", "title": "Corynebacterium uterequi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Bielefeld University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001021065.1", "bioproject": "PRJNA224116", "biosample": "SAMN03480647", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1072256", "species_taxid": "1072256", "organism_name": "Corynebacterium uterequi", "infraspecific_name": "strain=DSM 45634", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/06/05", "asm_name": "ASM102106v1", "asm_submitter": "Bielefeld University", "gbrs_paired_asm": "GCA_001021065.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/021/065/GCF_001021065.1_ASM102106v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2419437", "genome_size_ungapped": "2419437", "gc_percent": "65.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001021065.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "2240", "protein_coding_gene_count": "2145", "non_coding_gene_count": "70", "pubmed_id": "26227590" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-06-05", "dateModified": "2015-06-05", "datePublished": "2015-06-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium uterequi" ], "sample_taxid": [ "1072256" ], "sample_host_organism": [ "Equus caballus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden: Henan" ], "sample_host_location_id": [], "data_size": "0.670 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 37.0, "max": 37.0 }, "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2419437", "Number of Sequences": "1", "Longest Sequences (bp)": "2419437", "N50 (bp)": "2419437", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.5", "Number of CDSs": "2202", "Average Protein Length": "328.9", "Coding Ratio (%)": "89.8", "Number of rRNAs": "15", "Number of tRNAs": "54", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium uterequi", "strain": "strain=DSM 45634", "accession": "GCA_001021065.1", "taxid": 1072256, "species_taxid": 1072256, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 805, "total_fragments": 806, 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"organism_name": "Corynebacterium maris", "strain": "strain=DSM 45190", "accession": "GCA_000442645.1", "taxid": 575200, "species_taxid": 575200, "relation_to_type": "type", "validated": true, "ani": 78.7603, "matched_fragments": 307, "total_fragments": 806, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium humireducens", "strain": "strain=NBRC 106098", "accession": "GCA_001571025.1", "taxid": 1223514, "species_taxid": 1223514, "relation_to_type": "type", "validated": true, "ani": 78.7377, "matched_fragments": 302, "total_fragments": 806, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium tapiri", "strain": "strain=LMG 28165", "accession": "GCA_006334925.1", "taxid": 1448266, "species_taxid": 1448266, "relation_to_type": "type", "validated": true, "ani": 78.5835, "matched_fragments": 233, "total_fragments": 806, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium 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"accession": "GCA_900478035.1", "taxid": 1724, "species_taxid": 1724, "relation_to_type": "type", "validated": true, "ani": 77.8575, "matched_fragments": 127, "total_fragments": 806, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella endophytica", "strain": "strain=KE2-3", "accession": "GCA_003427025.1", "taxid": 1623398, "species_taxid": 1623398, "relation_to_type": "type", "validated": true, "ani": 75.6786, "matched_fragments": 128, "total_fragments": 806, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella ureilytica", "strain": "strain=KC603", "accession": "GCA_004348545.1", "taxid": 2530374, "species_taxid": 2530374, "relation_to_type": "type", "validated": true, "ani": 75.6512, "matched_fragments": 128, "total_fragments": 806, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001021065.1", 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229, "total_fragments": 806, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000159635.1", "gtdb_species": "s__Corynebacterium lipophiloflavum", "ani": 78.3143, "matched_fragments": 207, "total_fragments": 806, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012838985.1", "gtdb_species": "s__Corynebacterium sp012838985", "ani": 78.2525, "matched_fragments": 240, "total_fragments": 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