{ "type": "genome", "identifier": "GCF_001021555.1", "organism": "Aurantiacibacter marinus", "title": "Aurantiacibacter marinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Second Institute of Oceanography, State Oceanic Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001021555.1", "bioproject": "PRJNA224116", "biosample": "SAMN03656146", "wgs_master": "LDCP00000000.1", "refseq_category": "reference genome", "taxid": "874156", "species_taxid": "874156", "organism_name": "Aurantiacibacter marinus", "infraspecific_name": "strain=KCTC 23554", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/06/08", "asm_name": "ASM102155v1", "asm_submitter": "Second Institute of Oceanography, State Oceanic Administration", "gbrs_paired_asm": "GCA_001021555.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/021/555/GCF_001021555.1_ASM102155v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2835898", "genome_size_ungapped": "2835898", "gc_percent": "59.000000", "replicon_count": "0", "scaffold_count": "5", "contig_count": "5", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001021555.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "2754", "protein_coding_gene_count": "2701", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-06-08", "dateModified": "2015-06-08", "datePublished": "2015-06-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Aurantiacibacter marinus" ], "sample_taxid": [ "874156" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Yellow Sea" ], "sample_host_location_id": [], "data_size": "0.798 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2835898", "Number of Sequences": "5", "Longest Sequences (bp)": "1338863", "N50 (bp)": "750748", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.1", "Number of CDSs": "2730", "Average Protein Length": "318.4", "Coding Ratio (%)": "92.0", "Number of rRNAs": "3", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aurantiacibacter marinus", "strain": "strain=KCTC 23554", "accession": "GCA_001021555.1", "taxid": 874156, "species_taxid": 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"total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter zhengii", "strain": "strain=V18", "accession": "GCA_003584125.1", "taxid": 2307003, "species_taxid": 2307003, "relation_to_type": "type", "validated": true, "ani": 78.6195, "matched_fragments": 374, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter odishensis", "strain": "strain=KCTC 23981", "accession": "GCA_003605195.1", "taxid": 1155476, "species_taxid": 1155476, "relation_to_type": "type", "validated": true, "ani": 78.5396, "matched_fragments": 415, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteraurantiacibacter aestuarii", "strain": "strain=JCM 16339", "accession": "GCA_009827405.1", "taxid": 650004, "species_taxid": 650004, "relation_to_type": "type", "validated": true, "ani": 78.3827, "matched_fragments": 256, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter arachoides", "strain": "strain=CGMCC 1.15507", "accession": "GCA_014643415.1", "taxid": 1850444, "species_taxid": 1850444, "relation_to_type": "type", "validated": true, "ani": 78.1457, "matched_fragments": 331, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter arachoides", "strain": "strain=RC4-10-4", "accession": "GCA_009827335.1", "taxid": 1850444, "species_taxid": 1850444, "relation_to_type": "type", "validated": true, "ani": 78.1221, "matched_fragments": 338, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania xiamenensis", "strain": "strain=1XM1-15A", "accession": "GCA_019711495.1", "taxid": 2867237, "species_taxid": 2867237, "relation_to_type": "type", "validated": true, "ani": 78.0533, "matched_fragments": 209, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania huizhouensis", "strain": "strain=YG19", "accession": "GCA_019711635.1", "taxid": 2867245, "species_taxid": 2867245, "relation_to_type": "type", "validated": true, "ani": 78.0098, "matched_fragments": 181, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania proteolytica", "strain": "strain=6B39", "accession": "GCA_019711565.1", "taxid": 2867239, "species_taxid": 2867239, "relation_to_type": "type", "validated": true, "ani": 77.852, "matched_fragments": 230, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter luteus", "strain": "strain=KA37", "accession": "GCA_001010945.1", "taxid": 1581420, "species_taxid": 1581420, "relation_to_type": "type", "validated": true, "ani": 77.8147, "matched_fragments": 363, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium xixiisoli", "strain": "strain=S36", "accession": "GCA_009827305.1", "taxid": 1476466, "species_taxid": 1476466, "relation_to_type": "type", "validated": true, "ani": 77.578, "matched_fragments": 227, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter rhizovicinus", "strain": "strain=AY-3R", "accession": "GCA_004135625.1", "taxid": 2268576, "species_taxid": 2268576, "relation_to_type": "type", "validated": true, "ani": 77.1576, "matched_fragments": 187, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001021555.1", "gtdb_species": "s__Alteraurantiacibacter marinus", "ani": 100.0, "matched_fragments": 943, "total_fragments": 943, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteraurantiacibacter", 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