# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_26	LOCUS_00260	sequence1:36572..37024(-)	partial			WP_001827266.1	tRNA-dihydrouridine synthase	100.0	48.4	96.0
MGA_52	LOCUS_00520	sequence1:68384..68638(+)	partial			WP_000577184.1	GntR family transcriptional regulator	94.0	34.9	40.7
MGA_53	LOCUS_00530	sequence1:68666..69781(+)	internal_stop_codon	68636..68638(+)		WP_003244019.1	PLP-dependent aminotransferase family protein	100.0	77.0	37.2
MGA_72	LOCUS_00720	sequence1:91102..91443(+)	partial			WP_000414629.1	MFS transporter	100.0	54.3	98.2
MGA_93	LOCUS_00930	sequence1:112715..112909(+)	partial			WP_000469833.1	XRE family transcriptional regulator	100.0	16.4	98.4
MGA_94	LOCUS_00940	sequence1:113282..113767(+)	frameshift		113695	WP_011117535.1	replication initiation factor domain-containing protein	89.4	49.0	73.3
MGA_95	LOCUS_00950	sequence1:113752..114042(+)	frameshift		113695	WP_011117535.1	replication initiation factor domain-containing protein	99.0	31.0	63.2
MGA_97	LOCUS_00970	sequence1:115066..115287(+)	frameshift,internal_stop_codon	114851..114853(+)	115057	WP_000093392.1	IS200/IS605 family transposase	87.7	39.8	98.4
MGA_148	LOCUS_01480	sequence1:181669..182628(+)	partial			WP_001796914.1	ABC transporter permease	100.0	64.8	91.5
MGA_215	LOCUS_02150	sequence1:263754..263981(+)	partial			WP_126475239.1	IS1182 family transposase	85.3	11.7	98.4
MGA_243	LOCUS_02430	sequence1:292270..292422(+)	frameshift		292413	WP_000141941.1	TIGR01741 family protein	96.0	28.9	87.5
MGA_244	LOCUS_02440	sequence1:292466..292765(+)	frameshift		292413	WP_000141941.1	TIGR01741 family protein	100.0	59.6	81.8
MGA_322	LOCUS_03220	sequence1:366705..367016(-)	frameshift		367008,367281,366912,367113	WP_047210621.1	site-specific integrase	75.7	19.2	66.7
MGA_323	LOCUS_03230	sequence1:367094..367252(-)	frameshift		367280,366920,367115,367373,367007	WP_047210621.1	site-specific integrase	88.5	11.3	84.8
MGA_356	LOCUS_03560	sequence1:397839..398534(+)	partial			WP_000705657.1	superantigen-like protein SSL4	92.2	72.6	42.3
MGA_368	LOCUS_03680	sequence1:410837..411310(+)	frameshift		411584,411301	WP_001557596.1	tandem-type lipoprotein	88.5	51.9	83.5
MGA_369	LOCUS_03690	sequence1:411426..411644(+)	frameshift		411584,411301	WP_001557596.1	tandem-type lipoprotein	98.6	26.2	78.9
MGA_498	LOCUS_04910	sequence1:562963..565950(+)	partial			WP_001060462.1	MSCRAMM family adhesin SdrC	72.1	75.2	94.7
MGA_529	LOCUS_05220	sequence1:601825..602166(+)	partial			WP_000798967.1	DUF1450 domain-containing protein	69.0	69.0	100.0
MGA_543	LOCUS_05360	sequence1:613556..613801(+)	partial			WP_000020814.1	T7SS effector LXG polymorphic toxin	66.7	11.6	57.4
MGA_634	LOCUS_06270	sequence1:704600..704884(-)	partial			WP_001801730.1	hypothetical protein	90.4	73.9	100.0
MGA_698	LOCUS_06910	sequence1:774691..775023(+)	internal_stop_codon	775021..775023(+)		WP_000538141.1	HD domain-containing protein	100.0	50.9	97.3
MGA_699	LOCUS_06920	sequence1:775111..775341(+)	internal_stop_codon	775021..775023(+)		WP_000538141.1	HD domain-containing protein	100.0	35.2	98.7
MGA_731	LOCUS_07240	sequence1:810991..813720(+)	partial			WP_001056195.1	MSCRAMM family adhesin clumping factor ClfA	61.5	56.5	82.6
MGA_732	LOCUS_07250	sequence1:813941..814060(+)	frameshift		814054	WP_000791702.1	von Willebrand factor binding protein Vwb	94.9	7.4	97.3
MGA_774	LOCUS_07670	sequence1:845643..846410(+)	partial			WP_001148557.1	phage antirepressor KilAC domain-containing protein	73.3	72.2	88.2
MGA_787	LOCUS_07800	sequence1:850986..851756(+)	partial			WP_000190248.1	DnaD domain protein	38.3	39.1	43.9
MGA_953	LOCUS_09460	sequence1:1012948..1013163(-)	partial			WP_001788574.1	NINE protein	100.0	74.0	97.2
MGA_991	LOCUS_09840	sequence1:1056322..1056456(-)	partial			WP_000064214.1	glycopeptide resistance-associated protein GraF	54.5	54.5	100.0
MGA_1068	LOCUS_10610	sequence1:1134434..1134760(+)	internal_stop_codon	1134758..1134760(+)		WP_000584398.1	hypothetical protein	91.7	58.9	87.9
MGA_1107	LOCUS_11000	sequence1:1173206..1173400(-)	partial			WP_126475239.1	IS1182 family transposase	81.2	9.5	98.1
MGA_1126	LOCUS_11190	sequence1:1195312..1195515(-)	partial			WP_001548522.1	TM2 domain-containing protein	100.0	72.8	100.0
MGA_1154	LOCUS_11470	sequence1:1224310..1225668(-)	partial			WP_000915238.1	lipoteichoic acid-specific glycosyltransferase YfhO	100.0	52.1	93.4
MGA_1226	LOCUS_12190	sequence1:1310891..1311475(+)	partial			WP_002485350.1	minor capsid protein	68.6	35.5	56.0
MGA_1230	LOCUS_12230	sequence1:1312949..1313239(+)	internal_stop_codon	1312937..1312939(+),1312856..1312858(+)		WP_002485350.1	minor capsid protein	94.8	22.8	45.1
MGA_1232	LOCUS_12250	sequence1:1313485..1313835(+)	partial			WP_002485350.1	minor capsid protein	100.0	25.9	72.4
MGA_1306	LOCUS_12990	sequence1:1395059..1395355(+)	partial			WP_126475239.1	IS1182 family transposase	99.0	17.8	94.8
MGA_1322	LOCUS_13150	sequence1:1410977..1411171(-)	frameshift		1411215	WP_126475239.1	IS1182 family transposase	100.0	11.7	98.4
MGA_1323	LOCUS_13160	sequence1:1411189..1411581(-)	frameshift		1411215	WP_126475239.1	IS1182 family transposase	67.7	16.1	87.5
MGA_1403	LOCUS_13960	sequence1:1525502..1525708(-)	partial			WP_001033761.1	hypothetical protein	92.6	8.8	63.5
MGA_1492	LOCUS_14850	sequence1:1607132..1607308(-)	partial			WP_000048060.1	30S ribosomal protein S21	74.1	74.1	100.0
MGA_1539	LOCUS_15320	sequence1:1654976..1655122(-)	partial			WP_000009238.1	SAS049 family protein	72.9	72.9	100.0
MGA_1602	LOCUS_15950	sequence1:1724986..1725792(-)	frameshift,internal_stop_codon	1725834..1725836(-)	1725836	WP_126475239.1	IS1182 family transposase	100.0	49.2	96.6
MGA_1603	LOCUS_15960	sequence1:1725810..1726637(-)	frameshift,internal_stop_codon	1725834..1725836(-)	1725836	WP_126475239.1	IS1182 family transposase	95.3	48.1	94.3
MGA_1635	LOCUS_16280	sequence1:1765539..1766294(+)	frameshift		1766132	WP_000184370.1	transglycosylase domain-containing protein	78.9	65.8	94.9
MGA_1636	LOCUS_16290	sequence1:1766243..1766443(+)	frameshift		1766132	WP_000184370.1	transglycosylase domain-containing protein	100.0	21.9	98.5
MGA_1644	LOCUS_16370	sequence1:1778893..1779933(-)	partial			WP_000193903.1	hypothetical protein	84.1	62.4	73.2
MGA_1669	LOCUS_16620	sequence1:1814157..1814381(-)	frameshift		1814209,1814404	WP_126475239.1	IS1182 family transposase	78.4	12.3	82.1
MGA_1670	LOCUS_16630	sequence1:1814378..1814869(-)	frameshift		1814208,1814817,1814403	WP_126475239.1	IS1182 family transposase	84.7	25.3	93.5
MGA_1691	LOCUS_16840	sequence1:1832753..1833577(+)	frameshift		1833574	WP_126475239.1	IS1182 family transposase	100.0	50.3	96.0
MGA_1692	LOCUS_16850	sequence1:1833610..1834218(+)	frameshift		1833574	WP_126475239.1	IS1182 family transposase	100.0	37.1	97.0
MGA_1714	LOCUS_17070	sequence1:1851252..1851395(-)	frameshift,internal_stop_codon	1851252..1851254(-)	1851242	WP_000159787.1	transposase	89.4	46.7	76.2
MGA_1715	LOCUS_17080	sequence1:1852265..1852642(-)	partial			WP_010989411.1	DUF1433 domain-containing protein	74.4	66.9	44.1
MGA_1716	LOCUS_17090	sequence1:1853162..1857274(-)	partial			WP_011391500.1	hypothetical protein	48.8	43.2	26.4
MGA_1729	LOCUS_17220	sequence1:1870322..1871695(-)	partial			WP_000699969.1	S8 family serine peptidase	69.1	55.1	38.9
MGA_1730	LOCUS_17230	sequence1:1871705..1872223(-)	partial			WP_010880496.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	77.9	35.3	38.0
MGA_1731	LOCUS_17240	sequence1:1872239..1873483(-)	partial			WP_011026975.1	lanthionine synthetase C family protein	75.1	69.1	24.1
MGA_1769	LOCUS_17610	sequence1:1916216..1917319(+)	frameshift,internal_stop_codon	1917318..1917320(+)	1916204	WP_001557163.1	ISL3-like element IS1181 family transposase	100.0	83.6	97.3
MGA_1865	LOCUS_18540	sequence1:2018702..2019049(+)	frameshift		2018640,2018917	WP_000179343.1	tyrosine-type recombinase/integrase	100.0	29.7	54.2
MGA_1869	LOCUS_18580	sequence1:2022190..2023449(-)	partial			WP_000120296.1	SdrH family protein	53.9	54.5	95.1
MGA_1948	LOCUS_19350	sequence1:2108485..2108838(-)	partial			WP_001801792.1	ATP synthase subunit I	83.8	65.3	98.0
MGA_1986	LOCUS_19730	sequence1:2147193..2147396(-)	frameshift,internal_stop_codon	2147193..2147195(-)	2147373	WP_010925589.1	recombinase family protein	86.6	53.6	73.3
MGA_2019	LOCUS_20040	sequence1:2199074..2199874(+)	frameshift		2199742	WP_126475239.1	IS1182 family transposase	95.1	47.7	80.0
MGA_2020	LOCUS_20050	sequence1:2199892..2200191(+)	frameshift,internal_stop_codon	2200190..2200192(+)	2199742	WP_126475239.1	IS1182 family transposase	100.0	18.2	100.0
MGA_2021	LOCUS_20060	sequence1:2200354..2200698(+)	internal_stop_codon	2200189..2200191(+)		WP_126475239.1	IS1182 family transposase	99.1	20.7	99.1
MGA_2050	LOCUS_20350	sequence1:2230090..2231226(-)	partial			WP_003549016.1	ATP-dependent Clp protease ATP-binding subunit	88.6	46.2	23.4
MGA_2052	LOCUS_20370	sequence1:2232031..2232324(-)	frameshift		2232323	WP_010939452.1	DEAD/DEAH box helicase family protein	96.9	6.1	47.4
MGA_2053	LOCUS_20380	sequence1:2232321..2233418(-)	frameshift		2233521,2232323,2233647	WP_011202675.1	DEAD/DEAH box helicase family protein	100.0	24.7	33.1
MGA_2148	LOCUS_21320	sequence1:2313227..2313541(+)	frameshift		2313424	WP_126475239.1	IS1182 family transposase	81.7	14.7	72.9
MGA_2195	LOCUS_21790	sequence1:2360146..2360502(+)	partial			WP_126475239.1	IS1182 family transposase	87.3	18.9	94.2
MGA_2224	LOCUS_22080	sequence1:2391516..2392154(+)	internal_stop_codon	2392152..2392154(+)		WP_000276759.1	DUF2268 domain-containing protein	100.0	69.7	99.1
MGA_2225	LOCUS_22090	sequence1:2392224..2392430(+)	internal_stop_codon	2392152..2392154(+)		WP_000276759.1	DUF2268 domain-containing protein	100.0	22.4	100.0
MGA_2322	LOCUS_23060	sequence1:2493140..2493421(-)	frameshift		2493435	WP_001044255.1	membrane protein	100.0	21.1	96.8
MGA_2323	LOCUS_23070	sequence1:2493352..2494464(-)	frameshift		2493432	WP_001044255.1	membrane protein	93.0	78.0	87.5
MGA_2331	LOCUS_23150	sequence1:2502727..2502897(-)	partial			WP_001795286.1	hypothetical protein	100.0	72.7	92.9
MGA_2350	LOCUS_23340	sequence1:2530928..2531392(-)	partial			WP_011948695.1	MarR family transcriptional regulator	85.1	73.0	38.2
MGA_2412	LOCUS_23960	sequence1:2598143..2598463(+)	partial			WP_001795157.1	hypothetical protein	100.0	63.9	99.1
MGA_2452	LOCUS_24360	sequence1:2636128..2636814(-)	partial			WP_003894962.1	MBL fold metallo-hydrolase	61.4	67.3	30.8
MGA_2469	LOCUS_24530	sequence1:2656707..2659340(-)	partial			WP_000745891.1	MSCRAMM family adhesin clumping factor ClfB	62.9	62.9	97.6
MGA_2493	LOCUS_24770	sequence1:2693668..2694039(-)	partial			WP_000044547.1	serine-rich repeat glycoprotein adhesin SasA	55.3	3.0	92.6
MGA_2494	LOCUS_24780	sequence1:2694020..2694784(+)	internal_stop_codon	2694782..2694784(+),2693930..2693932(+),2693924..2693926(+),2693867..2693869(+)		WP_002485492.1	hypothetical protein	63.0	29.8	34.1
MGA_2495	LOCUS_24790	sequence1:2694908..2696116(+)	internal_stop_codon	2696114..2696116(+),2694782..2694784(+),2696294..2696296(+),2696192..2696194(+)		WP_002485492.1	hypothetical protein	99.0	73.8	38.0
MGA_2496	LOCUS_24800	sequence1:2696396..2697196(+)	internal_stop_codon	2697368..2697370(+),2697194..2697196(+),2696114..2696116(+),2696294..2696296(+),2696384..2696386(+),2697284..2697286(+),2696192..2696194(+)		WP_002485492.1	hypothetical protein	99.2	50.8	40.7
MGA_2497	LOCUS_24810	sequence1:2697374..2697652(+)	internal_stop_codon	2697368..2697370(+),2697194..2697196(+),2697284..2697286(+),2697650..2697652(+)		WP_002485492.1	hypothetical protein	95.7	19.6	41.7
MGA_2498	LOCUS_24820	sequence1:2697662..2698186(+)	internal_stop_codon	2697650..2697652(+),2698184..2698186(+)		WP_002485492.1	hypothetical protein	98.3	42.4	39.6
MGA_2516	LOCUS_25000	sequence1:2715538..2715750(-)	partial			WP_000837587.1	hypothetical protein	64.3	76.3	95.6
MGA_2517	LOCUS_25010	sequence1:2715910..2716542(-)	frameshift		2716556	WP_000592610.1	imidazole glycerol phosphate synthase subunit HisF	100.0	45.5	100.0
MGA_2518	LOCUS_25020	sequence1:2716539..2717297(-)	frameshift		2716553	WP_000592610.1	imidazole glycerol phosphate synthase subunit HisF	98.4	53.7	100.0
MGA_2548	LOCUS_25320	sequence1:2744776..2745186(+)	frameshift		2745156	WP_002305939.1	IS30 family transposase	97.1	41.4	67.4
MGA_2550	LOCUS_25340	sequence1:2745822..2746172(+)	partial			WP_002305939.1	IS30 family transposase	89.7	32.6	70.2
MGA_2562	LOCUS_25460	sequence1:2754748..2754885(-)	partial			WP_000240855.1	50S ribosomal protein L34	60.0	60.0	100.0
MGA_2590	LOCUS_25740	sequence2:25049..25384(+)	partial			WP_031588332.1	recombinase family protein	100.0	55.8	99.1
