{ "type": "genome", "identifier": "GCF_001027865.1", "organism": "Neisseria arctica", "title": "Neisseria arctica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Alaska Fairbanks", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001027865.1", "bioproject": "PRJNA224116", "biosample": "SAMN03177367", "wgs_master": "JTDO00000000.1", "refseq_category": "na", "taxid": "1470200", "species_taxid": "1470200", "organism_name": "Neisseria arctica", "infraspecific_name": "strain=KH1503", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/06/14", "asm_name": "ASM102786v1", "asm_submitter": "University of Alaska Fairbanks", "gbrs_paired_asm": "GCA_001027865.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/027/865/GCF_001027865.1_ASM102786v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2397977", "genome_size_ungapped": "2397977", "gc_percent": "46.500000", "replicon_count": "0", "scaffold_count": "275", "contig_count": "275", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001027865.1-RS_2024_06_16", "annotation_date": "2024-06-16", "total_gene_count": "2388", "protein_coding_gene_count": "2209", "non_coding_gene_count": "56", "pubmed_id": "26184936" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-06-14", "dateModified": "2015-06-14", "datePublished": "2015-06-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Neisseria arctica" ], "sample_taxid": [ "1470200" ], "sample_host_organism": [ "Anser albifrons" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: North Slope, Alaska" ], "sample_host_location_id": [], "data_size": "0.684 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2397977", "Number of Sequences": "275", "Longest Sequences (bp)": "242609", "N50 (bp)": "112539", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "46.4", "Number of CDSs": "2106", "Average Protein Length": "308.2", "Coding Ratio (%)": "81.2", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Neisseria arctica", "strain": "strain=KH1503", "accession": "GCA_001027865.1", "taxid": 1470200, "species_taxid": 1470200, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 761, "total_fragments": 762, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Neisseria arctica", "strain": "strain=KH1503", "accession": "GCA_022870905.1", "taxid": 1470200, "species_taxid": 1470200, "relation_to_type": "type", "validated": true, "ani": 99.9958, "matched_fragments": 762, "total_fragments": 762, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Uruburuella testudinis", "strain": "strain=CCUG 63373m", "accession": "GCA_022870865.1", "taxid": 1282863, "species_taxid": 1282863, "relation_to_type": "type", "validated": true, "ani": 78.3171, "matched_fragments": 290, "total_fragments": 762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria wadsworthii", "strain": "strain=9715", "accession": "GCA_000227765.1", "taxid": 607711, "species_taxid": 607711, "relation_to_type": "type", "validated": true, "ani": 78.2195, "matched_fragments": 164, "total_fragments": 762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria weaveri", "strain": "strain=NCTC12742", "accession": "GCA_900638685.1", "taxid": 28091, "species_taxid": 28091, "relation_to_type": "type", "validated": true, "ani": 78.1073, "matched_fragments": 223, "total_fragments": 762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria dumasiana", "strain": "strain=LMG 30012", "accession": "GCA_022870885.1", "taxid": 1931275, "species_taxid": 1931275, "relation_to_type": "type", "validated": true, "ani": 78.1037, "matched_fragments": 234, "total_fragments": 762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria dentiae", "strain": "strain=DSM 19151", "accession": "GCA_014055005.1", "taxid": 194197, "species_taxid": 194197, "relation_to_type": "type", "validated": true, "ani": 78.0922, "matched_fragments": 210, "total_fragments": 762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria weaveri", "strain": "strain=LMG 5135", "accession": "GCA_000224255.2", "taxid": 28091, "species_taxid": 28091, "relation_to_type": "type", "validated": true, "ani": 78.0424, "matched_fragments": 216, "total_fragments": 762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria dentiae", "strain": "strain=DSM 19151", "accession": "GCA_002108595.1", "taxid": 194197, "species_taxid": 194197, "relation_to_type": "type", "validated": true, "ani": 77.9519, "matched_fragments": 214, "total_fragments": 762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria zalophi", "strain": "strain=ATCC BAA-2455", "accession": "GCA_008807015.1", "taxid": 640030, "species_taxid": 640030, "relation_to_type": "type", "validated": true, "ani": 77.9399, "matched_fragments": 197, "total_fragments": 762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria flavescens", "strain": "strain=NCTC8263", "accession": "GCA_900453805.1", "taxid": 484, "species_taxid": 484, 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"below_threshold" }, { "organism_name": "Neisseria iguanae", "strain": "strain=ATCC 51483", "accession": "GCA_003013245.1", "taxid": 90242, "species_taxid": 90242, "relation_to_type": "type", "validated": true, "ani": 77.6671, "matched_fragments": 164, "total_fragments": 762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kingella potus", "strain": "strain=NCTC13336", "accession": "GCA_900451175.1", "taxid": 265175, "species_taxid": 265175, "relation_to_type": "type", "validated": true, "ani": 77.3157, "matched_fragments": 130, "total_fragments": 762, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001027865.1", "gtdb_species": "s__Neisseria arctica", "ani": 100.0, "matched_fragments": 761, "total_fragments": 762, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.19", "min_intra_species_ani": "98.86", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.97", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_009671065.1", "gtdb_species": "s__Neisseria brasiliensis", "ani": 78.0973, "matched_fragments": 210, "total_fragments": 762, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.38", "min_intra_species_ani": "99.05", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_014055005.1", "gtdb_species": "s__Neisseria dentiae", "ani": 78.0725, "matched_fragments": 211, "total_fragments": 762, "gtdb_taxonomy": 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