{
    "type": "genome",
    "identifier": "GCF_001028175.1",
    "organism": "Caballeronia mineralivorans PML1(12)",
    "title": "Caballeronia mineralivorans PML1(12)",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "CNRS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001028175.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03768919",
        "wgs_master": "AEJF00000000.1",
        "refseq_category": "reference genome",
        "taxid": "908627",
        "species_taxid": "2010198",
        "organism_name": "Caballeronia mineralivorans PML1(12)",
        "infraspecific_name": "strain=PML1(12)",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/06/15",
        "asm_name": "ASM102817v1",
        "asm_submitter": "CNRS",
        "gbrs_paired_asm": "GCA_001028175.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/028/175/GCF_001028175.1_ASM102817v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "9368249",
        "genome_size_ungapped": "9368249",
        "gc_percent": "60.000000",
        "replicon_count": "0",
        "scaffold_count": "377",
        "contig_count": "377",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001028175.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "8812",
        "protein_coding_gene_count": "8409",
        "non_coding_gene_count": "57",
        "pubmed_id": "26205858"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-06-15",
    "dateModified": "2015-06-15",
    "datePublished": "2015-06-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Caballeronia mineralivorans PML1(12)"
        ],
        "sample_taxid": [
            "908627"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France: Morvan"
        ],
        "sample_host_location_id": [],
        "data_size": "2.654 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.38,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "9368249",
        "Number of Sequences": "377",
        "Longest Sequences (bp)": "272460",
        "N50 (bp)": "70828",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "60.1",
        "Number of CDSs": "8408",
        "Average Protein Length": "303.4",
        "Coding Ratio (%)": "81.7",
        "Number of rRNAs": "3",
        "Number of tRNAs": "57",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "species_taxid": 2010198,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 2963,
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            },
            {
                "organism_name": "Caballeronia udeis",
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                "species_taxid": 1232866,
                "relation_to_type": "type",
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                "ani": 87.7611,
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                "status": "below_threshold"
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            {
                "organism_name": "Caballeronia telluris",
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                "species_taxid": 326475,
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                "status": "below_threshold"
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            {
                "organism_name": "Caballeronia choica",
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                "taxid": 326476,
                "species_taxid": 326476,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Caballeronia terrestris",
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                "taxid": 1226301,
                "species_taxid": 1226301,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1071,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Caballeronia humi",
                "strain": "",
                "accession": "GCA_001544475.2",
                "taxid": 326474,
                "species_taxid": 326474,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2075,
                "matched_fragments": 1072,
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                "ani_threshold": 95,
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            },
            {
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                "taxid": 60547,
                "species_taxid": 60547,
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                "matched_fragments": 1138,
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            {
                "organism_name": "Caballeronia glathei",
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            {
                "organism_name": "Caballeronia arationis",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Caballeronia zhejiangensis",
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                "status": "below_threshold"
            },
            {
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            {
                "organism_name": "Paraburkholderia ginsengisoli",
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Paraburkholderia gardini",
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            },
            {
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        ]
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    "_genome_taxon": [
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        "mineralivorans",
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}