{ "type": "genome", "identifier": "GCF_001028665.1", "organism": "Burkholderia pyrrocinia", "title": "Burkholderia pyrrocinia", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyungpook National University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001028665.1", "bioproject": "PRJNA224116", "biosample": "SAMN03651233", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "60550", "species_taxid": "60550", "organism_name": "Burkholderia pyrrocinia", "infraspecific_name": "strain=DSM 10685", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/06/12", "asm_name": "ASM102866v1", "asm_submitter": "Kyungpook National University", "gbrs_paired_asm": "GCA_001028665.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/028/665/GCF_001028665.1_ASM102866v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7961346", "genome_size_ungapped": "7961346", "gc_percent": "66.500000", "replicon_count": "4", "scaffold_count": "4", "contig_count": "4", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001028665.1-RS_2024_03_27", "annotation_date": "2024-03-27", "total_gene_count": "7223", "protein_coding_gene_count": "6997", "non_coding_gene_count": "91", "pubmed_id": "26150017" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-06-12", "dateModified": "2015-06-12", "datePublished": "2015-06-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Burkholderia pyrrocinia" ], "sample_taxid": [ "60550" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan" ], "sample_host_location_id": [], "data_size": "2.150 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7961346", "Number of Sequences": "4", "Longest Sequences (bp)": "3584103", "N50 (bp)": "3214754", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.5", "Number of CDSs": "7127", "Average Protein Length": "321.4", "Coding Ratio (%)": "86.3", "Number of rRNAs": "18", "Number of tRNAs": "82", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Burkholderia pyrrocinia", "strain": "strain=DSM 10685", "accession": "GCA_001028665.1", "taxid": 60550, "species_taxid": 60550, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 2649, 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488729, "species_taxid": 488729, "relation_to_type": "type", "validated": true, "ani": 92.4264, "matched_fragments": 1970, "total_fragments": 2651, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia metallica", "strain": "", "accession": "GCA_902499065.1", "taxid": 488729, "species_taxid": 488729, "relation_to_type": "type", "validated": true, "ani": 92.3562, "matched_fragments": 1943, "total_fragments": 2651, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia contaminans", "strain": "strain=LMG 23361", "accession": "GCA_000987075.1", "taxid": 488447, "species_taxid": 488447, "relation_to_type": "type", "validated": true, "ani": 92.3351, "matched_fragments": 2098, "total_fragments": 2651, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia contaminans", "strain": "strain=LMG 23361", "accession": "GCA_001758385.2", "taxid": 488447, "species_taxid": 488447, "relation_to_type": "type", 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