{ "type": "genome", "identifier": "GCF_001029505.1", "organism": "Rubrobacter aplysinae", "title": "Rubrobacter aplysinae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Wuerzburg", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001029505.1", "bioproject": "PRJNA224116", "biosample": "SAMN03729479", "wgs_master": "LEKH00000000.1", "refseq_category": "reference genome", "taxid": "909625", "species_taxid": "909625", "organism_name": "Rubrobacter aplysinae", "infraspecific_name": "strain=RV113", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/06/18", "asm_name": "ASM102950v1", "asm_submitter": "University of Wuerzburg", "gbrs_paired_asm": "GCA_001029505.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/029/505/GCF_001029505.1_ASM102950v1", "excluded_from_refseq": "na", 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[ "Croatia: Rovinj" ], "sample_host_location_id": [], "data_size": "0.891 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3187461", "Number of Sequences": "33", "Longest Sequences (bp)": "458670", "N50 (bp)": "201704", "Gap Ratio (%)": "0.009286", "GCcontent (%)": "65.1", "Number of CDSs": "3117", "Average Protein Length": "298.4", "Coding Ratio (%)": "87.5", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rubrobacter aplysinae", "strain": "strain=RV113", "accession": "GCA_001029505.1", "taxid": 909625, "species_taxid": 909625, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1045, "total_fragments": 1047, 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"organism_name": "Rubrobacter indicoceani", "strain": "strain=SCSIO 08198", "accession": "GCA_003568865.1", "taxid": 2051957, "species_taxid": 2051957, "relation_to_type": "type", "validated": true, "ani": 76.6485, "matched_fragments": 196, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia kunmingensis", "strain": "strain=DSM 45301", "accession": "GCA_006716445.1", "taxid": 630975, "species_taxid": 630975, "relation_to_type": "type", "validated": true, "ani": 75.1394, "matched_fragments": 95, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces spectabilis", "strain": "strain=KCTC9218", "accession": "GCA_022698305.1", "taxid": 68270, "species_taxid": 68270, "relation_to_type": "type", "validated": true, "ani": 75.098, "matched_fragments": 84, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura cremea", "strain": 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