{ "type": "genome", "identifier": "GCF_001038205.1", "organism": "Muribacter muris", "title": "Muribacter muris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Copenhagen", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001038205.1", "bioproject": "PRJNA224116", "biosample": "SAMN03263884", "wgs_master": "JWIZ00000000.1", "refseq_category": "na", "taxid": "67855", "species_taxid": "67855", "organism_name": "Muribacter muris", "infraspecific_name": "strain=Ackerman80-443D", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/06/23", "asm_name": "ASM103820v1", "asm_submitter": "University of Copenhagen", "gbrs_paired_asm": "GCA_001038205.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/038/205/GCF_001038205.1_ASM103820v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2457363", "genome_size_ungapped": "2457363", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "126", "contig_count": "126", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001038205.1-RS_2024_04_02", "annotation_date": "2024-04-02", "total_gene_count": "2501", "protein_coding_gene_count": "2339", "non_coding_gene_count": "55", "pubmed_id": "26296776" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-06-23", "dateModified": "2015-06-23", "datePublished": "2015-06-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Muribacter muris" ], "sample_taxid": [ "67855" ], "sample_host_organism": [ "mouse" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.698 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2457363", "Number of Sequences": "126", "Longest Sequences (bp)": "133266", "N50 (bp)": "39684", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.7", "Number of CDSs": "2343", "Average Protein Length": "298.3", "Coding Ratio (%)": "85.3", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Muribacter muris", "strain": "strain=Ackerman80-443D", "accession": "GCA_001038205.1", "taxid": 67855, "species_taxid": 67855, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 750, "total_fragments": 754, "ani_threshold": 95, "status": "conclusive" }, { 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"accession": "GCA_003634665.1", "taxid": 1032623, "species_taxid": 1032623, "relation_to_type": "type", "validated": true, "ani": 78.651, "matched_fragments": 109, "total_fragments": 754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ursidibacter maritimus", "strain": "strain=Pb43106", "accession": "GCA_019188485.1", "taxid": 1331689, "species_taxid": 1331689, "relation_to_type": "type", "validated": true, "ani": 78.5645, "matched_fragments": 171, "total_fragments": 754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vespertiliibacter pulmonis", "strain": "strain=DSM 27238", "accession": "GCA_003843855.1", "taxid": 1443036, "species_taxid": 1443036, "relation_to_type": "type", "validated": true, "ani": 78.5247, "matched_fragments": 131, "total_fragments": 754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vespertiliibacter pulmonis", "strain": "strain=CCUG 64585", "accession": "GCA_013377275.1", "taxid": 1443036, "species_taxid": 1443036, "relation_to_type": "type", "validated": true, "ani": 78.43, "matched_fragments": 132, "total_fragments": 754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ursidibacter maritimus", "strain": "strain=Pb43106", "accession": "GCA_009761395.1", "taxid": 1331689, "species_taxid": 1331689, "relation_to_type": "type", "validated": true, "ani": 78.4062, "matched_fragments": 171, "total_fragments": 754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haemophilus paracuniculus", "strain": "strain=CCUG 43573", "accession": "GCA_002015115.1", "taxid": 734, "species_taxid": 734, "relation_to_type": "type", "validated": true, "ani": 78.312, "matched_fragments": 248, "total_fragments": 754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mannheimia haemolytica", "strain": "strain=NCTC9380", "accession": "GCA_900452985.1", "taxid": 75985, "species_taxid": 75985, "relation_to_type": "type", 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"total_fragments": 754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pasteurella testudinis", "strain": "strain=NCTC12150", "accession": "GCA_900454705.1", "taxid": 761, "species_taxid": 761, "relation_to_type": "type", "validated": true, "ani": 77.3299, "matched_fragments": 116, "total_fragments": 754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pasteurella testudinis", "strain": "strain=DSM 23072", "accession": "GCA_019633665.1", "taxid": 761, "species_taxid": 761, "relation_to_type": "type", "validated": true, "ani": 77.1322, "matched_fragments": 115, "total_fragments": 754, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001038205.1", "gtdb_species": "s__Muribacter muris", "ani": 100.0, "matched_fragments": 750, "total_fragments": 754, "gtdb_taxonomy": 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