{ "type": "genome", "identifier": "GCF_001038425.2", "organism": "Ornithinibacillus contaminans", "title": "Ornithinibacillus contaminans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001038425.2", "bioproject": "PRJNA224116", "biosample": "SAMN02947408", "wgs_master": "LDPV00000000.2", "refseq_category": "reference genome", "taxid": "694055", "species_taxid": "694055", "organism_name": "Ornithinibacillus contaminans", "infraspecific_name": "strain=DSM 22953", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/08/25", "asm_name": "ASM103842v2", "asm_submitter": "Zhejiang University", "gbrs_paired_asm": "GCA_001038425.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/038/425/GCF_001038425.2_ASM103842v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3389443", "genome_size_ungapped": "3389443", "gc_percent": "38.000000", "replicon_count": "0", "scaffold_count": "53", "contig_count": "53", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001038425.2-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3484", "protein_coding_gene_count": "3362", "non_coding_gene_count": "74", "pubmed_id": "26706221" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-08-25", "dateModified": "2015-08-25", "datePublished": "2015-08-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Ornithinibacillus contaminans" ], "sample_taxid": [ "694055" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "0.964 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3389443", "Number of Sequences": "53", "Longest Sequences (bp)": "349453", "N50 (bp)": "149722", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.0", "Number of CDSs": "3409", "Average Protein Length": "281.6", "Coding Ratio (%)": "85.0", "Number of rRNAs": "8", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ornithinibacillus contaminans", "strain": "strain=DSM 22953", "accession": "GCA_001038425.2", "taxid": 694055, "species_taxid": 694055, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1099, "total_fragments": 1104, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Ornithinibacillus massiliensis", "strain": "strain=Marseille-P3601", "accession": "GCA_018310345.1", "taxid": 1944633, "species_taxid": 1944633, "relation_to_type": "type", "validated": true, "ani": 78.6301, "matched_fragments": 335, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinibacillus scapharcae", "strain": "strain=TW25", "accession": "GCA_000190475.2", "taxid": 1147159, "species_taxid": 1147159, "relation_to_type": "type", "validated": true, "ani": 78.4247, "matched_fragments": 311, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinibacillus halotolerans", "strain": "strain=CGMCC 1.12408", "accession": "GCA_014637405.1", "taxid": 1274357, "species_taxid": 1274357, "relation_to_type": "type", "validated": true, "ani": 78.2305, "matched_fragments": 295, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinibacillus halophilus", "strain": "strain=IBRC-M 10683", "accession": "GCA_900129485.1", "taxid": 930117, "species_taxid": 930117, "relation_to_type": "type", "validated": true, "ani": 77.8578, "matched_fragments": 175, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus senegalensis", "strain": "strain=Marseille-P3587", "accession": "GCA_900176885.1", "taxid": 1936063, "species_taxid": 1936063, "relation_to_type": "type", "validated": true, "ani": 77.6945, "matched_fragments": 112, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus piezotolerans", "strain": "strain=YLB-02", "accession": "GCA_003665065.1", "taxid": 2448030, "species_taxid": 2448030, "relation_to_type": "type", "validated": true, "ani": 77.6385, "matched_fragments": 96, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgibacillus ndiopensis", "strain": "strain=Marseille-P3835", "accession": "GCA_900187325.1", "taxid": 2004408, "species_taxid": 2004408, "relation_to_type": "type", "validated": true, "ani": 77.4775, "matched_fragments": 164, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus damuensis", "strain": "strain=PT-20", "accession": "GCA_001618145.1", "taxid": 937928, "species_taxid": 937928, "relation_to_type": "type", "validated": true, "ani": 77.3876, "matched_fragments": 83, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus arenosus", "strain": "strain=CAU 1183", "accession": "GCA_003369575.1", "taxid": 1229153, "species_taxid": 1229153, "relation_to_type": "type", "validated": true, "ani": 77.1781, "matched_fragments": 127, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentibacillus halodurans", "strain": "strain=CGMCC 1.3702", "accession": "GCA_900112045.1", "taxid": 237679, "species_taxid": 237679, "relation_to_type": "type", "validated": true, "ani": 77.0815, "matched_fragments": 62, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus polygoni", "strain": "strain=SA9", "accession": "GCA_008304605.1", "taxid": 1235259, "species_taxid": 1235259, "relation_to_type": "type", "validated": true, "ani": 76.9505, "matched_fragments": 137, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ureibacillus chungkukjangi", "strain": "strain=2RL32", "accession": "GCA_003049615.1", "taxid": 1202712, "species_taxid": 1202712, "relation_to_type": "type", "validated": true, "ani": 76.6598, "matched_fragments": 51, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 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