{
    "type": "genome",
    "identifier": "GCF_001039475.1",
    "organism": "Alkalihalobacillus macyae",
    "title": "Alkalihalobacillus macyae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Fujian Academy of Agricultural Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001039475.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03766539",
        "wgs_master": "LELK00000000.1",
        "refseq_category": "reference genome",
        "taxid": "157733",
        "species_taxid": "157733",
        "organism_name": "Alkalihalobacillus macyae",
        "infraspecific_name": "strain=DSM 16346",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/06/25",
        "asm_name": "ASM103947v1",
        "asm_submitter": "Fujian Academy of Agricultural Sciences",
        "gbrs_paired_asm": "GCA_001039475.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/039/475/GCF_001039475.1_ASM103947v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4256776",
        "genome_size_ungapped": "4256612",
        "gc_percent": "40.000000",
        "replicon_count": "0",
        "scaffold_count": "15",
        "contig_count": "15",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001039475.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "4316",
        "protein_coding_gene_count": "4188",
        "non_coding_gene_count": "93",
        "pubmed_id": "26272580"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-06-25",
    "dateModified": "2015-06-25",
    "datePublished": "2015-06-25",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Alkalihalobacillus macyae"
        ],
        "sample_taxid": [
            "157733"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Australia: Bendigo, Victoria"
        ],
        "sample_host_location_id": [],
        "data_size": "1.207 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4256776",
        "Number of Sequences": "15",
        "Longest Sequences (bp)": "2061986",
        "N50 (bp)": "1507096",
        "Gap Ratio (%)": "0.004698",
        "GCcontent (%)": "39.8",
        "Number of CDSs": "4275",
        "Average Protein Length": "285.0",
        "Coding Ratio (%)": "85.9",
        "Number of rRNAs": "5",
        "Number of tRNAs": "81",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Alkalihalobacillus macyae",
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            {
                "organism_name": "Metabacillus halosaccharovorans",
                "strain": "strain=DSM 25387",
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                "taxid": 930124,
                "species_taxid": 930124,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "accession": "GCA_016401385.1",
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                "matched_fragments": 66,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fictibacillus norfolkensis",
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                "accession": "GCA_014836645.1",
                "taxid": 2762233,
                "species_taxid": 2762233,
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                "matched_fragments": 64,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus massiliogorillae",
                "strain": "strain=G2",
                "accession": "GCA_000380245.2",
                "taxid": 1243664,
                "species_taxid": 1243664,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 56,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sutcliffiella halmapala",
                "strain": "strain=DSM 8723",
                "accession": "GCA_002019665.1",
                "taxid": 79882,
                "species_taxid": 79882,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1876,
                "matched_fragments": 58,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus tropicus",
                "strain": "strain=N24",
                "accession": "GCA_001884035.1",
                "taxid": 2026188,
                "species_taxid": 2026188,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0097,
                "matched_fragments": 60,
                "total_fragments": 1410,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus paranthracis",
                "strain": "strain=Mn5",
                "accession": "GCA_001883995.1",
                "taxid": 2026186,
                "species_taxid": 2026186,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8166,
                "matched_fragments": 59,
                "total_fragments": 1410,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_001039475.1",
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                "matched_fragments": 1410,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_G;f__HB172195;g__Anaerobacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_005144865.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017303315.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_G;f__HB172195;g__Anaerobacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_015234585.1",
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                "mean_intra_species_ani": "N/A",
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                "accession": "GCF_009818105.1",
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            },
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                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
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        "genome_size": null,
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        "coding_genes": null,
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        "anaerobic_respiration": null,
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": null,
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        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
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    },
    "_genome_taxon": [
        "Alkalihalobacillus",
        "macyae"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}