{ "type": "genome", "identifier": "GCF_001042635.1", "organism": "Bifidobacterium scardovii JCM 12489 = DSM 13734", "title": "Bifidobacterium scardovii JCM 12489 = DSM 13734", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Graduate School of Frontier Sciences, University of Tokyo", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001042635.1", "bioproject": "PRJNA224116", "biosample": "SAMD00061046", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1150461", "species_taxid": "158787", "organism_name": "Bifidobacterium scardovii JCM 12489 = DSM 13734", "infraspecific_name": "strain=JCM 12489", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/02/17", "asm_name": "ASM104263v1", "asm_submitter": "Graduate School of Frontier Sciences, University of Tokyo", "gbrs_paired_asm": "GCA_001042635.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/042/635/GCF_001042635.1_ASM104263v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3158347", "genome_size_ungapped": "3158347", "gc_percent": "64.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001042635.1-RS_2024_10_16", "annotation_date": "2024-10-16", "total_gene_count": "2603", "protein_coding_gene_count": "2484", "non_coding_gene_count": "67", "pubmed_id": "25858848" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-02-17", "dateModified": "2015-02-17", "datePublished": "2015-02-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Bifidobacterium scardovii JCM 12489 = DSM 13734" ], "sample_taxid": [ "1150461" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.869 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3158347", "Number of Sequences": "1", "Longest Sequences (bp)": "3158347", "N50 (bp)": "3158347", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.6", "Number of CDSs": "2590", "Average Protein Length": "347.8", "Coding Ratio (%)": "85.6", "Number of rRNAs": "6", "Number of tRNAs": "58", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bifidobacterium scardovii", "strain": "strain=JCM 12489", "accession": "GCA_001042635.1", "taxid": 158787, 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