{ "type": "genome", "identifier": "GCF_001042675.1", "organism": "Parascardovia denticolens DSM 10105 = JCM 12538", "title": "Parascardovia denticolens DSM 10105 = JCM 12538", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Graduate School of Frontier Sciences, University of Tokyo", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001042675.1", "bioproject": "PRJNA224116", "biosample": "SAMD00061048", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "864564", "species_taxid": "78258", "organism_name": "Parascardovia denticolens DSM 10105 = JCM 12538", "infraspecific_name": "strain=JCM 12538", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/03/24", "asm_name": "ASM104267v1", "asm_submitter": "Graduate School of Frontier Sciences, University of Tokyo", "gbrs_paired_asm": "GCA_001042675.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/042/675/GCF_001042675.1_ASM104267v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1890857", "genome_size_ungapped": "1890857", "gc_percent": "58.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001042675.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "1599", "protein_coding_gene_count": "1521", "non_coding_gene_count": "54", "pubmed_id": "25977413" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-03-24", "dateModified": "2015-03-24", "datePublished": "2015-03-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Parascardovia denticolens DSM 10105 = JCM 12538" ], "sample_taxid": [ "864564" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.532 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1890857", "Number of Sequences": "1", "Longest Sequences (bp)": "1890857", "N50 (bp)": "1890857", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.3", "Number of CDSs": "1598", "Average Protein Length": "343.1", "Coding Ratio (%)": "87.0", "Number of rRNAs": "4", "Number of tRNAs": "45", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Parascardovia denticolens", "strain": "strain=JCM 12538", "accession": "GCA_001042675.1", "taxid": 78258, 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"status": "below_threshold" }, { "organism_name": "Pseudoscardovia radai", "strain": "strain=DSM 24742", "accession": "GCA_002259605.1", "taxid": 987066, "species_taxid": 987066, "relation_to_type": "type", "validated": true, "ani": 77.7591, "matched_fragments": 92, "total_fragments": 630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium asteroides", "strain": "strain=DSM 20089", "accession": "GCA_000771125.1", "taxid": 1684, "species_taxid": 1684, "relation_to_type": "suspected-type", "validated": true, "ani": 77.7577, "matched_fragments": 105, "total_fragments": 630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium lemurum", "strain": "strain=DSM 28807", "accession": "GCA_002259665.1", "taxid": 1603886, "species_taxid": 1603886, "relation_to_type": "type", "validated": true, "ani": 77.7397, "matched_fragments": 96, "total_fragments": 630, "ani_threshold": 95, "status": "below_threshold" }, { 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