{ "type": "genome", "identifier": "GCF_001042895.1", "organism": "Pseudomonas deceptionensis", "title": "Pseudomonas deceptionensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zentralinstitut fuer Ernaehrungs- und Lebensmittelforschung (ZIEL), WZW, TUM", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001042895.1", "bioproject": "PRJNA224116", "biosample": "SAMN03328792", "wgs_master": "JYKX00000000.1", "refseq_category": "na", "taxid": "882211", "species_taxid": "882211", "organism_name": "Pseudomonas deceptionensis", "infraspecific_name": "strain=DSM 26521", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/06/30", "asm_name": "G8684", "asm_submitter": "Zentralinstitut fuer Ernaehrungs- und Lebensmittelforschung (ZIEL), WZW, TUM", "gbrs_paired_asm": "GCA_001042895.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/042/895/GCF_001042895.1_G8684", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5052933", "genome_size_ungapped": "5052933", "gc_percent": "58.500000", "replicon_count": "0", "scaffold_count": "15", "contig_count": "15", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001042895.1-RS_2024_04_02", "annotation_date": "2024-04-02", "total_gene_count": "4665", "protein_coding_gene_count": "4542", "non_coding_gene_count": "75", "pubmed_id": "26675012" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-06-30", "dateModified": "2015-06-30", "datePublished": "2015-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas deceptionensis" ], "sample_taxid": [ "882211" ], "sample_host_organism": [ "not collected" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica: South Shetland Islands, Deception Island" ], "sample_host_location_id": [], "data_size": "1.424 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5052933", "Number of Sequences": "15", "Longest Sequences (bp)": "1862075", "N50 (bp)": "755170", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.6", "Number of CDSs": "4649", "Average Protein Length": "321.9", "Coding Ratio (%)": "88.8", "Number of rRNAs": "5", "Number of tRNAs": "66", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas deceptionensis", "strain": "strain=DSM 26521", "accession": "GCA_001042895.1", 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas germanica", "strain": "strain=FIT28", "accession": "GCA_019614655.1", "taxid": 2815720, "species_taxid": 2815720, "relation_to_type": "type", "validated": true, "ani": 81.7145, "matched_fragments": 922, "total_fragments": 1677, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas izuensis", "strain": "strain=IzPS43_3003", "accession": "GCA_009861505.1", "taxid": 2684212, "species_taxid": 2684212, "relation_to_type": "type", "validated": true, "ani": 81.7037, "matched_fragments": 931, "total_fragments": 1677, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900106095.1", "gtdb_species": "s__Pseudomonas_E deceptionensis", "ani": 99.9982, "matched_fragments": 1676, "total_fragments": 1677, "gtdb_taxonomy": 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