{
    "type": "genome",
    "identifier": "GCF_001042905.1",
    "organism": "Pseudomonas lini",
    "title": "Pseudomonas lini",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Zentralinstitut fuer Ernaehrungs- und Lebensmittelforschung (ZIEL), WZW, TUM",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001042905.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03328801",
        "wgs_master": "JYLB00000000.1",
        "refseq_category": "na",
        "taxid": "163011",
        "species_taxid": "163011",
        "organism_name": "Pseudomonas lini",
        "infraspecific_name": "strain=DSM 16768",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/06/30",
        "asm_name": "G8692",
        "asm_submitter": "Zentralinstitut fuer Ernaehrungs- und Lebensmittelforschung (ZIEL), WZW, TUM",
        "gbrs_paired_asm": "GCA_001042905.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/042/905/GCF_001042905.1_G8692",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6495504",
        "genome_size_ungapped": "6495504",
        "gc_percent": "59.000000",
        "replicon_count": "0",
        "scaffold_count": "26",
        "contig_count": "26",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001042905.1-RS_2024_10_11",
        "annotation_date": "2024-10-11",
        "total_gene_count": "5909",
        "protein_coding_gene_count": "5735",
        "non_coding_gene_count": "74",
        "pubmed_id": "26675012"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-06-30",
    "dateModified": "2015-06-30",
    "datePublished": "2015-06-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudomonas lini"
        ],
        "sample_taxid": [
            "163011"
        ],
        "sample_host_organism": [
            "not collected"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France"
        ],
        "sample_host_location_id": [],
        "data_size": "1.824 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6495504",
        "Number of Sequences": "26",
        "Longest Sequences (bp)": "993897",
        "N50 (bp)": "731568",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "58.8",
        "Number of CDSs": "5888",
        "Average Protein Length": "322.0",
        "Coding Ratio (%)": "87.6",
        "Number of rRNAs": "5",
        "Number of tRNAs": "63",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Pseudomonas lini",
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 2155,
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                "status": "conclusive"
            },
            {
                "organism_name": "Pseudomonas lini",
                "strain": "strain=CCUG 51522",
                "accession": "GCA_008801525.1",
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 2149,
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                "status": "conclusive"
            },
            {
                "organism_name": "Pseudomonas farris",
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                "accession": "GCA_019145235.1",
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                "species_taxid": 2841207,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas mandelii",
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                "accession": "GCA_007858265.1",
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                "species_taxid": 75612,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 88.2737,
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                "total_fragments": 2155,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas mandelii",
                "strain": "strain=NBRC 103147",
                "accession": "GCA_002091695.1",
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                "species_taxid": 75612,
                "relation_to_type": "suspected-type",
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                "ani": 88.2328,
                "matched_fragments": 1588,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas laurylsulfatiphila",
                "strain": "strain=AP3_16",
                "accession": "GCA_002934665.1",
                "taxid": 2011015,
                "species_taxid": 2011015,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.7787,
                "matched_fragments": 1444,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas izuensis",
                "strain": "strain=IzPS43_3003",
                "accession": "GCA_009861505.1",
                "taxid": 2684212,
                "species_taxid": 2684212,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.6233,
                "matched_fragments": 1443,
                "total_fragments": 2155,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas laurylsulfativorans",
                "strain": "strain=AP3_22",
                "accession": "GCA_002906155.1",
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                "species_taxid": 1943631,
                "relation_to_type": "type",
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                "ani": 86.5552,
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                "total_fragments": 2155,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas pharyngis",
                "strain": "strain=BML-PP036",
                "accession": "GCA_021602345.1",
                "taxid": 2892333,
                "species_taxid": 2892333,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.0603,
                "matched_fragments": 1467,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas sputi",
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                "accession": "GCA_021603585.1",
                "taxid": 2892325,
                "species_taxid": 2892325,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.004,
                "matched_fragments": 1433,
                "total_fragments": 2155,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas germanica",
                "strain": "strain=FIT28",
                "accession": "GCA_019614655.1",
                "taxid": 2815720,
                "species_taxid": 2815720,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.4327,
                "matched_fragments": 1506,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas rhizophila",
                "strain": "strain=S211",
                "accession": "GCA_003033885.1",
                "taxid": 2045200,
                "species_taxid": 2045200,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.135,
                "matched_fragments": 1384,
                "total_fragments": 2155,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_001042905.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "bacillus_cell_shape": 0.988,
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    "_genome_taxon": [
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        "lini"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}