{ "type": "genome", "identifier": "GCF_001043025.1", "organism": "Pseudomonas helleri", "title": "Pseudomonas helleri", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zentralinstitut fuer Ernaehrungs- und Lebensmittelforschung (ZIEL), WZW, TUM", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001043025.1", "bioproject": "PRJNA224116", "biosample": "SAMN03328804", "wgs_master": "JYLD00000000.1", "refseq_category": "na", "taxid": "1608996", "species_taxid": "1608996", "organism_name": "Pseudomonas helleri", "infraspecific_name": "strain=DSM 29165", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/06/30", "asm_name": "MG221", "asm_submitter": "Zentralinstitut fuer Ernaehrungs- und Lebensmittelforschung (ZIEL), WZW, TUM", "gbrs_paired_asm": "GCA_001043025.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/043/025/GCF_001043025.1_MG221", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5676287", "genome_size_ungapped": "5676287", "gc_percent": "58.000000", "replicon_count": "0", "scaffold_count": "37", "contig_count": "37", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001043025.1-RS_2024_12_22", "annotation_date": "2024-12-22", "total_gene_count": "5132", "protein_coding_gene_count": "4993", "non_coding_gene_count": "75", "pubmed_id": "26675012" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-06-30", "dateModified": "2015-06-30", "datePublished": "2015-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas helleri" ], "sample_taxid": [ "1608996" ], "sample_host_organism": [ "not collected" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Southern Germany" ], "sample_host_location_id": [], "data_size": "1.599 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5676287", "Number of Sequences": "37", "Longest Sequences (bp)": "623802", "N50 (bp)": "336668", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.1", "Number of CDSs": "5092", "Average Protein Length": "329.1", "Coding Ratio (%)": "88.6", "Number of rRNAs": "4", "Number of tRNAs": "63", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas helleri", "strain": "strain=DSM 29165", "accession": "GCA_001043025.1", "taxid": 1608996, "species_taxid": 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1871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas psychrophila", "strain": "strain=CCUG 53877", "accession": "GCA_008801485.1", "taxid": 122355, "species_taxid": 122355, "relation_to_type": "type", "validated": true, "ani": 84.3827, "matched_fragments": 1128, "total_fragments": 1871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas taetrolens", "strain": "strain=NCTC10697", "accession": "GCA_900475285.1", "taxid": 47884, "species_taxid": 47884, "relation_to_type": "type", "validated": true, "ani": 83.9904, "matched_fragments": 1063, "total_fragments": 1871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas taetrolens", "strain": "strain=DSM 21104", "accession": "GCA_001042915.1", "taxid": 47884, "species_taxid": 47884, "relation_to_type": "type", "validated": true, "ani": 83.9736, "matched_fragments": 1066, "total_fragments": 1871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pharyngis", "strain": "strain=BML-PP036", "accession": "GCA_021602345.1", "taxid": 2892333, "species_taxid": 2892333, "relation_to_type": "type", "validated": true, "ani": 81.9113, "matched_fragments": 918, "total_fragments": 1871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas kitaguniensis", "strain": "strain=MAFF 212408", "accession": "GCA_009296165.1", "taxid": 2607908, "species_taxid": 2607908, "relation_to_type": "type", "validated": true, "ani": 81.8912, "matched_fragments": 829, "total_fragments": 1871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sputi", "strain": "strain=BML-PP014", "accession": "GCA_021603585.1", "taxid": 2892325, "species_taxid": 2892325, "relation_to_type": "type", "validated": true, "ani": 81.7865, "matched_fragments": 927, "total_fragments": 1871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lurida", "strain": "strain=LMG 21995", "accession": "GCA_002563895.1", "taxid": 244566, "species_taxid": 244566, "relation_to_type": "type", "validated": true, "ani": 81.7789, "matched_fragments": 930, "total_fragments": 1871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pergaminensis", "strain": "strain=1008", "accession": "GCA_024112395.1", "taxid": 2853159, "species_taxid": 2853159, "relation_to_type": "type", "validated": true, "ani": 81.6963, "matched_fragments": 976, "total_fragments": 1871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas germanica", "strain": "strain=FIT28", "accession": "GCA_019614655.1", "taxid": 2815720, "species_taxid": 2815720, "relation_to_type": "type", "validated": true, "ani": 81.5874, "matched_fragments": 892, "total_fragments": 1871, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001043025.1", "gtdb_species": "s__Pseudomonas_E helleri", "ani": 100.0, "matched_fragments": 1869, "total_fragments": 1871, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.29", "min_intra_species_ani": "96.40", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.80", "num_clustered_genomes": 22, "status": "conclusive" }, { "accession": "GCF_000282975.1", "gtdb_species": "s__Pseudomonas_E psychrophila_A", "ani": 86.3203, "matched_fragments": 1262, "total_fragments": 1871, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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