{ "type": "genome", "identifier": "GCF_001043055.1", "organism": "Pseudomonas weihenstephanensis", "title": "Pseudomonas weihenstephanensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zentralinstitut fuer Ernaehrungs- und Lebensmittelforschung (ZIEL), WZW, TUM", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001043055.1", "bioproject": "PRJNA224116", "biosample": "SAMN03328806", "wgs_master": "JYLF00000000.1", "refseq_category": "na", "taxid": "1608994", "species_taxid": "1608994", "organism_name": "Pseudomonas weihenstephanensis", "infraspecific_name": "strain=DSM 29166", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/06/30", "asm_name": "MG339", "asm_submitter": "Zentralinstitut fuer Ernaehrungs- und Lebensmittelforschung (ZIEL), WZW, TUM", "gbrs_paired_asm": "GCA_001043055.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/043/055/GCF_001043055.1_MG339", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4792107", "genome_size_ungapped": "4792107", "gc_percent": "57.500000", "replicon_count": "0", "scaffold_count": "32", "contig_count": "32", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001043055.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4475", "protein_coding_gene_count": "4310", "non_coding_gene_count": "72", "pubmed_id": "26675012" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-06-30", "dateModified": "2015-06-30", "datePublished": "2015-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas weihenstephanensis" ], "sample_taxid": [ "1608994" ], "sample_host_organism": [ "not collected" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Southern Germany" ], "sample_host_location_id": [], "data_size": "1.354 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4792107", "Number of Sequences": "32", "Longest Sequences (bp)": "855826", "N50 (bp)": "571018", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.3", "Number of CDSs": "4411", "Average Protein Length": "318.8", "Coding Ratio (%)": "88.0", "Number of rRNAs": "4", "Number of tRNAs": "63", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas deceptionensis", "strain": "strain=DSM 26521", "accession": "GCA_001042895.1", "taxid": 882211, "species_taxid": 882211, "relation_to_type": "type", "validated": true, "ani": 84.786, "matched_fragments": 1084, "total_fragments": 1583, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas deceptionensis", "strain": "strain=LMG 25555", "accession": "GCA_900106095.1", "taxid": 882211, "species_taxid": 882211, "relation_to_type": "type", "validated": true, "ani": 84.7457, "matched_fragments": 1087, "total_fragments": 1583, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas fragi", "strain": "strain=NRRL B-727", "accession": "GCA_900105835.1", "taxid": 296, "species_taxid": 296, "relation_to_type": "type", "validated": true, "ani": 84.5686, "matched_fragments": 1078, "total_fragments": 1583, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas fragi", "strain": "strain=NBRC 3458", "accession": "GCA_002091615.1", "taxid": 296, "species_taxid": 296, "relation_to_type": "type", "validated": true, "ani": 84.5306, "matched_fragments": 1067, "total_fragments": 1583, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas psychrophila", "strain": "strain=CCUG 53877", "accession": "GCA_008801485.1", "taxid": 122355, "species_taxid": 122355, "relation_to_type": "type", "validated": true, "ani": 84.4829, "matched_fragments": 1027, "total_fragments": 1583, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas psychrophila", "strain": "strain=DSM 17535", "accession": "GCA_001043005.1", "taxid": 122355, "species_taxid": 122355, "relation_to_type": "type", "validated": true, "ani": 84.4728, "matched_fragments": 1022, "total_fragments": 1583, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas paraversuta", "strain": "strain=V4/DAB/S4/2a", "accession": "GCA_904063065.1", "taxid": 2750624, "species_taxid": 2750624, "relation_to_type": "type", "validated": true, "ani": 84.0887, "matched_fragments": 1074, "total_fragments": 1583, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas helleri", "strain": "strain=DSM 29165", "accession": "GCA_001043025.1", "taxid": 1608996, "species_taxid": 1608996, "relation_to_type": "type", "validated": true, "ani": 83.9769, "matched_fragments": 1069, "total_fragments": 1583, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas taetrolens", "strain": "strain=NCTC10697", "accession": "GCA_900475285.1", "taxid": 47884, "species_taxid": 47884, "relation_to_type": "type", "validated": true, "ani": 83.7678, "matched_fragments": 1032, "total_fragments": 1583, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas taetrolens", "strain": "strain=DSM 21104", "accession": "GCA_001042915.1", "taxid": 47884, "species_taxid": 47884, "relation_to_type": "type", "validated": true, "ani": 83.745, "matched_fragments": 1035, "total_fragments": 1583, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lini", "strain": "strain=DSM 16768", "accession": "GCA_001042905.1", "taxid": 163011, "species_taxid": 163011, "relation_to_type": "type", "validated": true, "ani": 81.5939, "matched_fragments": 844, "total_fragments": 1583, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lini", "strain": "strain=CCUG 51522", "accession": "GCA_008801525.1", "taxid": 163011, "species_taxid": 163011, "relation_to_type": "type", "validated": true, "ani": 81.5444, "matched_fragments": 852, "total_fragments": 1583, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas germanica", "strain": "strain=FIT28", "accession": "GCA_019614655.1", "taxid": 2815720, "species_taxid": 2815720, "relation_to_type": "type", "validated": true, "ani": 81.4036, "matched_fragments": 849, "total_fragments": 1583, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pharyngis", "strain": "strain=BML-PP036", "accession": "GCA_021602345.1", "taxid": 2892333, "species_taxid": 2892333, "relation_to_type": "type", "validated": true, "ani": 81.3812, "matched_fragments": 854, "total_fragments": 1583, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas allokribbensis", "strain": "strain=IzPS23", "accession": "GCA_014863605.1", "taxid": 2774460, "species_taxid": 2774460, "relation_to_type": "type", "validated": true, "ani": 81.3654, "matched_fragments": 868, "total_fragments": 1583, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas spelaei", "strain": "strain=CCM 7893", "accession": "GCA_009724245.1", "taxid": 1055469, "species_taxid": 1055469, "relation_to_type": "type", "validated": true, "ani": 81.3578, "matched_fragments": 826, "total_fragments": 1583, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lurida", "strain": "strain=LMG 21995", "accession": "GCA_002563895.1", "taxid": 244566, "species_taxid": 244566, "relation_to_type": "type", "validated": true, "ani": 81.3458, "matched_fragments": 843, "total_fragments": 1583, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sputi", "strain": "strain=BML-PP014", "accession": "GCA_021603585.1", "taxid": 2892325, "species_taxid": 2892325, "relation_to_type": "type", "validated": true, "ani": 81.3216, "matched_fragments": 861, "total_fragments": 1583, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas marginalis", "strain": "strain=DSM 13124", "accession": "GCA_007858155.1", "taxid": 298, "species_taxid": 298, "relation_to_type": "suspected-type", "validated": true, "ani": 81.2456, "matched_fragments": 867, "total_fragments": 1583, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oleovorans subsp. oleovorans", "strain": "strain=DSM 1045", "accession": 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